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Protein Overview: RB47C_ARATH

General Information:
Name(s) found: RB47C_ARATH [Swiss-Prot]
Description(s) found:
Found 15 descriptions.
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  • Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana GN=RBP47C PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 432 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: RNA binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADVKIQSES ESSDSHPVVD NQPPPPPPPP QQPAKEEENQ PKTSPTPPPH WMRYPPTVII  60
   61 PHQMMYAPPP FPPYHQYPNH HHLHHQSRGN KHQNAFNGEN KTIWVGDLHH WMDEAYLNSS 120
  121 FASGDEREIV SVKVIRNKNN GLSEGYGFVE FESHDVADKV LREFNGTTMP NTDQPFRLNW 180
  181 ASFSTGEKRL ENNGPDLSIF VGDLSPDVSD NLLHETFSEK YPSVKAAKVV LDANTGRSKG 240
  241 YGFVRFGDEN ERTKAMTEMN GVKCSSRAMR IGPATPRKTN GYQQQGGYMP NGTLTRPEGD 300
  301 IMNTTIFVGG LDSSVTDEDL KQPFNEFGEI VSVKIPVGKG CGFVQFVNRP NAEEALEKLN 360
  361 GTVIGKQTVR LSWGRNPANK QPRDKYGNQW VDPYYGGQFY NGYGYMVPQP DPRMYPAAPY 420
  421 YPMYGGHQQQ VS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..76] PSI-BLAST 10.30103 No description for 2f3jA was found.
    2 View Details [77..432] PSI-BLAST 28.39794 No description for 2ghpA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  1.86761524461453 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.984778969024386 bayes_pls_golite062009
  • protein binding
    		•  0.426607329742248 bayes_pls_golite062009
  • RNA binding
    		•  0.0622892880461364 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle