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Protein Overview: gi|15230734, gi|...

General Information:
Name(s) found: gi|15230734 [NCBI NR]
gi|12322681 [NCBI NR]
Description(s) found:
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  • gi|15230734|ref|NP_187304.1| agenet domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|12322681|gb|AAG51333.1|AC020580_13 hypothetical protein; 66083-64412 [Arabidopsis thaliana] [NCBI NR]
  • (Q9C8Z3) Hypothetical protein [athaliana3702.FASTAC.txt]
  • hypothetical protein; 66083-64412 [Arabidopsis thaliana]gi|15230734|ref|NP_187304.1| agenet domain-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Agenet domain-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | agenet domain-containing protein | chr3:2020290-2021961 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • RNA binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • hypothetical protein; 66083-64412 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | agenet domain-containing protein | chr3:2020284-2021955 FORWARD LENGTH=466 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Agenet domain-containing protein OS=Arabidopsis thaliana GN=F5E6.15 PE=4 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 466 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: NONE FOUND
    Molecular Function: RNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSDRFWRGG DRVEVERLVS GATAYFPASV VSAPSVRKKL VWVEHESLTV GGSVSVRMKE  60
   61 YVTPTRLRPS PPRELNRRFK ADDEVDVFRD SEGCWVRGNV TTVLEDSRYI VEFKGENRPE 120
  121 IEVDQFNLRL HREWLDGGWV PSLLQQSNFS ESTAQRIKLK IKIKRRDQYE KGALVEVRSE 180
  181 EKAYKGSWYC ARILCLLGDD KYIVEHLKFS RDDGESIPLR DVVEAKDIRP VPPSELSPVV 240
  241 CYEPGVIVDA WFNKRWWTSR VSKVLGGGSN KYSVFIISTG EETTILNFNL RPHKDWINGQ 300
  301 WVIPSKVLTD VPEECYKPPL KKLKSCERAE KVFNNGMEVE VRSDEPGYEA SWFSAKIVSY 360
  361 LGENRYTVEY QTLKTDDERE LLKEEARGSD IRPPPPPLIP KGYRYELYEL VDAWYNEGWW 420
  421 SGRVYKINNN KTRYGVYFQT TDESLEFAYN DLRPCQVWRN GKWSRV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..164] FFAS03 2.23 Structure of the N-terminal domain of Fragile X Mental Retardation Protein
    2 View Details [165..318] PSI-BLAST 19.0 Structure of the N-terminal domain of Fragile X Mental Retardation Protein
    3 View Details [319..466] Pfam 26.107905 No description for PF05641.3 was found. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle