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Protein Overview: AGL23_ARATH

General Information:
Name(s) found: AGL23_ARATH [Swiss-Prot]
Description(s) found:
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  • pir||T02359 hypothetical protein T8F5.14 - Arabidopsis thaliana [NCBI NR]
  • gi|3335343|gb|AAC27145.1|AAC27145 Contains similarity to gb|L46397 MADS box protein (ZAG3) from Zea mays. [Arabidopsis thaliana] [NCBI NR]
  • gi|32402424|gb|AAN52794.1| MADS-box protein AGL23 [Arabidopsis thaliana] [NCBI NR]
  • gi|15218647|ref|NP_176715.1| AGL23 (AGAMOUS-LIKE 23); DNA binding / transcription factor [Arabidopsis thaliana] [NCBI NR]
  • Agamous-like MADS-box protein AGL23 OS=Arabidopsis thaliana GN=AGL23 PE=2 SV=1 [Swiss-Prot]
  • (O80807) T8F5.14 protein (MADS-box protein AGL23) [athaliana3702.FASTAC.txt]
  • MADS-box protein AGL23 [Arabidopsis thaliana]gi|3335343|gb|AAC27145.1| Contains similarity to gb|L46397 MADS box protein (ZAG3) from Zea mays. [Arabidopsis thaliana]gi|15218647|ref|NP_176715.1| MADS-box protein (AGL23) [Arabidopsis thaliana]gi|7487795| [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 MADS-box protein (AGL23) [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: AGL23 | AGL23; DNA binding / transcription factor | chr1:24285000-24285814 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • Contains similarity to gb|L46397 MADS box protein (ZAG3) from Zea mays. [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • MADS-box protein AGL23 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • DNA binding / transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: AGL23 | AGAMOUS-like 23 | chr1:24281337-24282151 FORWARD LENGTH=226 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • MADS-box protein AGL23 OS=Arabidopsis thaliana GN=T8F5.14 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 226 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    Biological Process: embryo sac development [IMP]
    chloroplast organization [IMP]
    Molecular Function: DNA binding [ISS]
    transcription factor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKKTLGRRK VEIVKMTKES NLQVTFSKRK AGLFKKASEF CTLCDAKIAM IVFSPAGKVF  60
   61 SFGHPNVDVL LDHFRGCVVG HNNTNLDESY TKLHVQMLNK SYTEVKAEVE KEQKNKQSRA 120
  121 QNERENENAE EWWSKSPLEL NLSQSTCMIR VLKDLKKIVD EKAIQLIHQT NPNFYVGSSS 180
  181 NAAAPATVSG GNISTNQGFF DQNGMTTNPT QTLLFGFDIM NRTPGV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..121] PSI-BLAST 20.0 Structural basis of sequence-specific recruitment of histone deacetylases by Myocyte Enhancer Factor-2
    2 View Details [122..226] MSA 8.348997 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle