Protein Overview: YDR365W-B

General Information:
Name(s) found:	YDR365W-B [SGD]
Description(s) found: SHOW ONLY BEST	Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes [SGD] Chr IV from 1206985-1208289,1208291-1212253 [yeastorf4.fasta]
Organism:	Saccharomyces cerevisiae
Length:	1755 amino acids
Gene Ontology:
Cellular Component:	retrotransposon nucleocapsid [ISS]
Biological Process:	transposition, RNA-mediated [ISS]
Molecular Function:	DNA-directed DNA polymerase activity [ISS] RNA-directed DNA polymerase activity [ISS] RNA binding [ISS] protein binding [ISS] ribonuclease activity [ISS] peptidase activity [ISS]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESQQLSQHS PISHGSACAS VTSKEVHTNQ DPLDVSASKT EECEKASTKA NSQQTTTPAS  60
   61 SAVPENPHHA SPQPASVPPP QNGPYPQQCM MTQNQANPSG WSFYGHPSMI PYTPYQMSPM 120
  121 YFPPGPQSQF PQYPSSVGTP LSTPSPESGN TFTDSSSADS DMTSTKKYVR PPPMLTSPND 180
  181 FPNWVKTYIK FLQNSNLGGI IPTVNGKPVR QITDDELTFL YNTFQIFAPS QFLPTWVKDI 240
  241 LSVDYTDIMK ILSKSIEKMQ SDTQEANDIV TLANLQYNGS TPADAFETKV TNIIDRLNNN 300
  301 GIHINNKVAC QLIMRGLSGE YKFLRYTRHR HLNMTVAELF LDIHAIYEEQ QGSRNSKPNY 360
  361 RRNLSDEKND SRSYTNTTKP KVIARNPQKT NNSKSKTARA HNVSTSNNSP STDNDSISKS 420
  421 TTEPIQLNNK HDLHLRPGTY *IYGKSH*SF ***TPWTPPS RFRSITNPYK ICSSHTLSII 480
  481 *S*HKRS*CS KKKYTN*RYW *PTISLPGQH QNINKGIAHS *HSL*LTQFE *IGCSRYHSM 540
  541 LYQKRLRTI* RHCTCTYRTI WRLLLGI*KV LASIKYLRTH HQ*CPYK*KY TQISLSFHSS 600
  601 NACACQCTDN SILT*K*HHH VF*RIRCRLV *CY*LSMS*L FNRQKHQTQT YQRFTTKIPK 660
  661 FIRTLSIPTY *HIWSSSQPT K*CTILFHLI Y**DNKIPLG LSITRPSRGL YPRCFYYDTS 720
  721 FY*EPVSGQC LGYTNGPWF* VY*QNSP*IP *KKWYNSMLY NHSGFPSTWS R*TAKPYLIR 780
  781 *LPYSTAM*W FTELFMVLCN RIFYYCEKFT SFT*KQKICK TTCWLGRT*Y QYFVTFRSTC 840
  841 YRQ*SQP*LQ NTSSWHPRLR STSVSKLLWI YHLSSILKED SRYN*LCYSS GQGIQIRSIQ 900
  901 LRRTHFR*RL KPFNCFISFV HCVK*DPRIQ *S*HRI*P*L PIRH*TTS*A TEKCPFKSCE 960
  961 SNRFHTSVNS Y*RFETCF*N QYSRTQRS*P QHI*I*YSSI KEEI*HPPNF QYREYRFGWY1020
 1021 A*IKCSFTCS HVPI*HT*VV ARQ*I*RFQT LRLVQ*K*D* SYKRTNIQYG WYQQQNCSAD1080
 1081 K*PRD*EKDY TPFTFNRCFS TGK*FIAQYC SYQNANYCF* TEYRGIYHR* SPTP*STSRI1140
 1141 SYRIP*PI*R TPTDKFSSN* FQFGWYW*L* CLYYYQQ*EK IIRR**N*N* GITRHMEY*E1200
 1201 YA*FRTSEIE ETNSPDCSCK SSKINQTNTD NLTIR*GNHL **RY*RKRKI YRGIPQRSQS1260
 1261 TVEDENLGH* RIL*QKRNRP *KSNKLNVYL QQET*RYS*S *ICCKR*YSA S*HLRLRHAI1320
 1321 QYRTSLCIND IPVTCIRQ*L LYYTIRHIFG IFVCRHQRRI IHKTSTTFRN E**VDTFEEI1380
 1381 TLWIETKWSE LVRNYQIIPD TTMWYGRSSW MVMRI*KQSS DNLFIRR*YG IV*QKSKFKQ1440
 1441 KNYREA*DAI RHQDYKSRRK **GNSI*HTW LRNQISKR*I HEIRYGKLIN *ENTQIKRTF1500
 1501 ESKRKKT*RS RSTRSLYRPG *TRNR*R*IQ REGT*NAKVD WSSFICWI*I *I*LTILHQH1560
 1561 TCSTYTIPL* ASFRHDI*VN TIHVGH*R*T INMAQKQTYQ AR**TSRNKR CFIW*PTILQ1620
 1621 VTNW*HFPTQ RKSDWRKVDK GFVNMHFNYR SRNTRSQ*SY TAIE*PQSPC ART*QETNYR1680
 1681 LTY***INDQ YN*VYK*REI *KQIFWHKGN ET*R*SIR** FIRILHRDQE EHC*CDDKTS1740
 1741 SDKNI*TIN* QMDSL

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

The following runs contain data for this protein:

	BAIT	COMMENTS	PUBLICATION
View Run	TIM50	No Comments	Hazbun TR, et al. (2003)
View Run	NSE3	No Comments	Hazbun TR, et al. (2003)
View Run	MIA40	No Comments	Hazbun TR, et al. (2003)
View Run	LST8	No Comments	Reinke A, et al. (2004)
View Run	TOR2	No Comments	Reinke A, et al. (2004)
View Run	KOG1	No Comments	Reinke A, et al. (2004)

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.93

Protein Overview: YDR365W-B

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: