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Protein Overview: SO3462

General Information:
Name(s) found: SO3462 [shew_pnnl_plus_contams_psm.fasta]
Description(s) found:
  • DNA repair protein RecN [shew_pnnl_plus_contams_psm.fasta]
    • Organism: Shewanella oneidensis
    Length: 552 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLCQLSINNF AIVRFLELDF SPGMTSITGE TGAGKSIAID ALGLCLGNRA DASSVRPGAS  60
   61 KTEVSARFSL HDVPLAKRWL EDNDLELDDE CILRRTIGSD GRSRAYINGN PVPLTQLKLL 120
  121 GQLLVGIHGQ HAHHAMLKSE HQLTLLDSYA NHRLLIDTVT ASYQRCKQIE AELKQLEASQ 180
  181 HERIARKQLV QYQVEELDEF DLKVGEFEEI EQEHKRLANG TELVDSCQAS LYLLTDGEES 240
  241 NIESLLNKVV SLAENLQSYD PALTNVSTML NEALIQVQES AGELQHYLSK LELDPAYFAY 300
  301 LEERLSKAMQ LARKHHVSPD KLAEHHLALK AELTTLDDDE TKLEEIQLQV EASKSAYLAN 360
  361 AQKLSQSRAR YAKELDKLVT QSIHELNMPK GKFTIEVNFN PEIMSVNGSD NIEFMVTTNP 420
  421 GQPLQPISRV ASGGELSRIG LGIQVITAKK VATPTLIFDE VDVGISGPTA AVVGRMLRSL 480
  481 GESTQVLCVT HLPQVAGNGH QHMFVNKFNK AGSTETTMTP LDKEQRIQEL ARLLGGDTIT 540
  541 SNTLANAREL LQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..171] PSI-BLAST 27.0 Structural biochemistry of ATP-driven dimerization and DNA stimulated activation of SMC ATPases.
    2 View Details [172..337] FFAS03 1.45 Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain
    3 View Details [338..552] PSI-BLAST 15.69897 Peptide transporter Tap1, C-terminal ABC domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • nucleoside-triphosphatase activity
    		•  1.5002869400376 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  1.49611313354225 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  1.47468810672455 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  1.47371190790284 bayes_pls_golite062009
  • binding
    		•  1.41264401383678 bayes_pls_golite062009
  • hydrolase activity
    		•  1.29419296935491 bayes_pls_golite062009
  • catalytic activity
    		•  1.00104173493322 bayes_pls_golite062009
  • ATPase activity
    		•  0.844502974582959 bayes_pls_golite062009
  • DNA-dependent ATPase activity
    		•  0.510757066819002 bayes_pls_golite062009
  • helicase activity
    		•  0.51056840156051 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.216266069700019 bayes_pls_golite062009
  • DNA helicase activity
    		•  0.148854929640752 bayes_pls_golite062009
  • nucleotide binding
    		•  0.114848452385726 bayes_pls_golite062009
  • purine nucleotide binding
    		•  0.10713474095071 bayes_pls_golite062009
  • purine ribonucleotide binding
    		•  0.0916519414118148 bayes_pls_golite062009
  • ribonucleotide binding
    		•  0.0915913646217636 bayes_pls_golite062009
    2 No functions predicted.
    3
    Term Confidence Notes
  • nucleoside-triphosphatase activity
    		•  1.5002869400376 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  1.49611313354225 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  1.47468810672455 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  1.47371190790284 bayes_pls_golite062009
  • binding
    		•  1.41264401383678 bayes_pls_golite062009
  • hydrolase activity
    		•  1.29419296935491 bayes_pls_golite062009
  • catalytic activity
    		•  1.00104173493322 bayes_pls_golite062009
  • ATPase activity
    		•  0.844502974582959 bayes_pls_golite062009
  • DNA-dependent ATPase activity
    		•  0.510757066819002 bayes_pls_golite062009
  • helicase activity
    		•  0.51056840156051 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.216266069700019 bayes_pls_golite062009
  • DNA helicase activity
    		•  0.148854929640752 bayes_pls_golite062009
  • nucleotide binding
    		•  0.114848452385726 bayes_pls_golite062009
  • purine nucleotide binding
    		•  0.10713474095071 bayes_pls_golite062009
  • purine ribonucleotide binding
    		•  0.0916519414118148 bayes_pls_golite062009
  • ribonucleotide binding
    		•  0.0915913646217636 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle