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Protein Overview: SO1861

General Information:
Name(s) found: SO1861 [shew_pnnl_plus_contams_psm.fasta]
Description(s) found:
Found 6 descriptions.
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  • excinuclease ABC C subunit [shew_pnnl_plus_contams_psm.fasta]
    • Organism: Shewanella oneidensis
    Length: 609 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTGFNAQSF LRTVTSSAGV YRMYDVKGDV IYVGKAKDLK KRLSSYFRKN LGNVKTQALV  60
   61 SHIHHIDVTL THSETDALLL ENDYIKQYMP KYNVLLRDDK SYPYILLSQH EHPRLAYHRG 120
  121 PQREKGHYFG PYPNGGAVRE SLHLMQKLFP IRQCDDLYYK SRTRPCLQYQ LSRCSAPCVG 180
  181 KVSNAEYDEQ VKLASLFLKG KDKQVISELV AKMEEAAEQQ AYEQAARFRD QIMALRRVAE 240
  241 QQEVSGNTGD MDVIGVHYAS GIACFHLLFI REGKIFGSRS YYPTVPAQTD IEEVLRSFLL 300
  301 QFYLNADIQR TIPKEVVISH HFEELHELEA AVSEALNKKF SIKTNVRADR ASFLRLAITN 360
  361 ATNAVMTRLS HKNTVEQRFV LLEEILELNA PIQRMECFDI SHTMGESTVA SCVVFNREGP 420
  421 HKAEYRRYNI EGITPGDDYA AMKQAISRRF DKIDASGKIP DILFIDGGLG QLRIAQQIVD 480
  481 EKFVNLDKAP QLIGVAKGES RKPGLETLIF GDTETSFSLE DDSPALHLIQ HIRDESHRFA 540
  541 ITGHRNRRQK TRNTSTLESI PGIGPKRRKA LLQHLGGLQE VKGASVAELA KVPGISIEMA 600
  601 QTIHDALRG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..173] PSI-BLAST 33.0 Crystal structure of the GIY-YIG N-terminal endonuclease domain of UvrC from Bacillus caldotenax
    2 View Details [174..246] FFAS03 2.21 C-terminal UvrC-binding domain of UvrB
    3 View Details [247..343] MSA 2.311986 View MSA. No confident structure predictions are available.
    4 View Details [344..609] PSI-BLAST 60.09691 No description for 2nrtA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle