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Protein Overview: YCAJ_ECOLI

General Information:
Name(s) found: YCAJ_ECOLI [Swiss-Prot]
Description(s) found:
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  • gi|77416801|sp|P0AAZ4.1|RARA_ECOLI RecName: Full=Replication-associated recombination protein A [NCBI NR]
  • pir||C64828 probable polynucleotide enzyme ycaJ [similarity] - Escherichia coli (strain K-12) [NCBI NR]
  • pir||A99751 probable polynucleotide enzyme [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509952) [NCBI NR]
  • gi|209775036|gb|ACI85830.1| putative polynucleotide enzyme [Escherichia coli] [NCBI NR]
  • gi|209775034|gb|ACI85829.1| putative polynucleotide enzyme [Escherichia coli] [NCBI NR]
  • gi|209775032|gb|ACI85828.1| putative polynucleotide enzyme [Escherichia coli] [NCBI NR]
  • gi|209775030|gb|ACI85827.1| putative polynucleotide enzyme [Escherichia coli] [NCBI NR]
  • gi|209775028|gb|ACI85826.1| putative polynucleotide enzyme [Escherichia coli] [NCBI NR]
  • Hypothetical protein ycaJ - Escherichia coli [Swiss-Prot]
  • putative polynucleotide enzyme [Escherichia coli K12]gi|15830231|ref|NP_309004.1| putative polynucleotide enzyme [Escherichia coli O157:H7]gi|26246918|ref|NP_752958.1| Hypothetical protein ycaJ [Escherichia coli CFT073]gi|1787119|gb|AAC73978.1| putativ [nrdb_11152004_Chlamydomonas]
  • Replication-associated recombination protein A [NCBI-RefSeq_human_na_08-09-2006_reversed.fasta]
  • Replication-associated recombination protein A OS=Escherichia coli (strain K12) GN=rarA PE=1 SV=1 [uniprot-Ecoli-reviewed-110511.fasta]
    • Organism: Escherichia coli
    Length: 447 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNLSLDFSD NTFQPLAARM RPENLAQYIG QQHLLAAGKP LPRAIEAGHL HSMILWGPPG  60
   61 TGKTTLAEVI ARYANADVER ISAVTSGVKE IREAIERARQ NRNAGRRTIL FVDEVHRFNK 120
  121 SQQDAFLPHI EDGTITFIGA TTENPSFELN SALLSRARVY LLKSLSTEDI EQVLTQAMED 180
  181 KTRGYGGQDI VLPDETRRAI AELVNGDARR ALNTLEMMAD MAEVDDSGKR VLKPELLTEI 240
  241 AGERSARFDN KGDRFYDLIS ALHKSVRGSA PDAALYWYAR IITAGGDPLY VARRCLAIAS 300
  301 EDVGNADPRA MQVAIAAWDC FTRVGPAEGE RAIAQAIVYL ACAPKSNAVY TAFKAALADA 360
  361 RERPDYDVPV HLRNAPTKLM KEMGYGQEYR YAHDEANAYA AGEVYFPPEI AQTRYYFPTN 420
  421 RGLEGKIGEK LAWLAEQDQN SPIKRYR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..369] PSI-BLAST 33.522879 ADP Bound E. coli Clamp Loader Complex
    2 View Details [370..447] PSI-BLAST 42.30103 No description for 2r9gA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.05015914982969 bayes_pls_golite062009
  • catalytic activity
    		•  1.00104173493322 bayes_pls_golite062009
  • hydrolase activity
    		•  0.502565068825558 bayes_pls_golite062009
  • purine ribonucleotide binding
    		•  0.337096034207063 bayes_pls_golite062009
  • ribonucleotide binding
    		•  0.33688241622626 bayes_pls_golite062009
  • purine nucleotide binding
    		•  0.335459976383557 bayes_pls_golite062009
  • nucleotide binding
    		•  0.326346376039545 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle