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Protein Overview: gi|148695761, gi...

General Information:
Name(s) found: gi|94368477 [NCBI NR]
gi|82885268 [NCBI NR]
gi|51706287 [NCBI NR]
gi|148695761 [NCBI NR]
Description(s) found:
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  • gi|94368477|ref|XP_978516.1| PREDICTED: similar to Trafficking protein particle complex subunit 6B [Mus musculus] [NCBI NR]
  • gi|82885268|ref|XP_921949.1| PREDICTED: similar to Trafficking protein particle complex subunit 6B isoform 3 [Mus musculus] [NCBI NR]
  • gi|51706287|ref|XP_485041.1| PREDICTED: similar to Trafficking protein particle complex subunit 6B isoform 1 [Mus musculus] [NCBI NR]
  • gi|148695761|gb|EDL27708.1| mCG142519 [Mus musculus] [NCBI NR]
  • similar to trafficking protein particle complex 6B [HMR_022704.fasta]
  • Similar to Trafficking protein particle complex Subunit 6B [ipi.MOUSE.v3.06.fasta]
  • similar to Trafficking protein particle complex subunit 6B [Mus musculus] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=10090 PREDICTED: similar to Trafficking protein particle complex subunit 6B isoform 1 [EBI-IPI_mouse_3.17_05-10-2006_con_reversed.fasta]
  • PREDICTED: similar to Trafficking protein particle complex subunit 6B isoform 1 [Mus musculus] [mouse-NCBI-010306_contam_rand.fasta]
  • PREDICTED: similar to Trafficking protein particle complex subunit 6B isoform 3 [Mus musculus] [mouse-NCBI-010306_contam_rand.fasta]
  • Tax_Id=10090 Similar to Trafficking protein particle complex Subunit 6B [EBI-IPI_mouse_3.06_05-10-2005_origrev_con.fasta]
  • PREDICTED: similar to Trafficking protein particle complex subunit 6B [Mus musculus] [NCBI-RefSeq_mouse_na_03-19-2007_reversed.fasta]
  • mCG142519 [Mus musculus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • Tax_Id=10090 SIMILAR TO TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 6B [Xentr4_EBI-IPI_human_mouse_rat_Xenopus_tropicalis_laevis_con_reversed.fasta]
  • Tax_Id=10090 Gene_Symbol=LOC433458 similar to Trafficking protein particle complex subunit 6B isoform 1 [zeeyong.fasta]
  • Tax_Id=10090 Gene_Symbol=Gm13880 trafficking protein particle complex subunit 6B-like isoform 1 [EBI-IPI_mouse_2_08-18-2011_reversed.fasta]
    • Organism: Mus musculus
    Length: 158 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADEALFLLL HNEMVSGVYK SAEQGEVENG RCITKLENTG FRVGQGLIER FTKDTERFKV  60
   61 ELDIMKFICK DFWTTVFKKQ IDNLRTNHQG IYVLQDNKFR LLIQLSAGKQ YLEHASKYLA 120
  121 LTCGLIRGRL SNLGIKSIVT AEVSSMPACK FQVMIQKL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..158] PSI-BLAST 70.522879 X-ray Structure of human TPC6


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle