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Protein Overview: RVB1

General Information:
Name(s) found: RVB1 / YDR190C [SGD]
Description(s) found:
Found 31 descriptions.
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  • Essential protein involved in transcription regulation; component of chromatin remodeling complexes; required for assembly and function of the INO80 complex; also referred to as pontin; member of the RUVB-like protein family [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 463 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    Swr1 complex [IDALink to PubMed articleLink to PubMed articleLink to PubMed article]
    Ino80 complex [IPILink to PubMed article]
    chromatin remodeling complex [IDALink to PubMed article]
    Biological Process: chromatin remodeling [IDALink to PubMed article][IPILink to PubMed article]
    regulation of transcription from RNA polymerase II promoter [IMPLink to PubMed article]
    Molecular Function: ATPase activity [IMPLink to PubMed article]
    ATP-dependent 5'-3' DNA helicase activity [IDALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAISEVKEN PGVNSSNSGA VTRTAAHTHI KGLGLDESGV AKRVEGGFVG QIEAREACGV  60
   61 IVDLIKAKKM SGRAILLAGG PSTGKTALAL AISQELGPKV PFCPLVGSEL YSVEVKKTET 120
  121 LMENFRRAIG LRIKETKEVY EGEVTELTPE DAENPLGGYG KTISHVIVGL KSAKGTKTLR 180
  181 LDPTIYESIQ REKVSIGDVI YIEANTGAVK RVGRSDAYAT EFDLETEEYV PLPKGEVHKK 240
  241 KEIVQDVTLH DLDVANARPQ GGQDVISMMG QLLKPKKTEI TEKLRQEVNK VVAKYIDQGV 300
  301 AELIPGVLFI DEVNMLDIEI FTYLNKALES NIAPVVVLAS NRGMTTVRGT EDVISPHGVP 360
  361 PDLIDRLLIV RTLPYDKDEI RTIIERRATV ERLQVESSAL DLLATMGTET SLRYALQLLA 420
  421 PCGILAQTSN RKEIVVNDVN EAKLLFLDAK RSTKILETSA NYL

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Riffle et al. (2010) (Unpublished Data) ARP4 ARP5 ARP6 ARP8 BDF1 IES1 IES2 IES3 IES5 INO80 NHP10 PIH1 RVB1 RVB2 SWC3 SWC4 SWC5 SWC7 SWR1 VPS71 VPS72 YAF9
    View Details Hazbun TR, et al. (2003) ARP4 EAF1 EAF5 EPL1 ESA1 RVB1 RVB2 SWC4 SWR1 TRA1 YAF9 YNG2
    View Details Krogan NJ, et al. (2006) ARP4 ARP5 ARP6 ARP8 CCA1 EAF1 EAF5 EAF6 EAF7 EPL1 ESA1 IES1 IES2 IES3 IES4 IES5 IES6 INO80 NHP10 NTO1 PIH1 RVB1 RVB2 SAS3 SWC3 SWC4 SWC5 SWC7 SWR1 TAH1 TRA1 VPS71 VPS72 YAF9 YNG2
    View Details Ho Y, et al. (2002) ARC15 ARC18 ARC19 ARC35 ARC40 ARP2 ARP3 ATP3 ATP4 AVO1 BCK1 BCK2 BEM3 BFA1 BRX1 BUD3 BUL1 CCR4 CCT2 CCT3 CCT6 CDC36 CDC39 CDC55 CIN8 CLU1 CTK3 CYS4 DIG1 DIG2 DMA1 DMA2 ERG1 FET3 GCN1 GFA1 GLC7 GPG1 GPH1 GUS1 HAS1 HIR1 HTA2 HTB1 HXT6 HYP2 ICP55 IDH1 KOG1 KRE33 KSS1 LOS1 LYS12 MKK2 MKT1 MNP1 NAN1 NET1 NOP56 NOP6 NPA3 NSR1 PEX19 PIL1 PIM1 PMA1 PMA2 POL5 POP2 PPE1 PPH22 PPZ2 PRB1 PSK1 PSK2 PST2 PUF3 REG1 RFA1 RGD1 RNH203 RNQ1 RNR2 RPA135 RPB11 RPN1 RPN6 RPN7 RPN8 RPT2 RPT3 RPT4 RRP12 RSE1 RTS1 RTS3 RVB1 RVB2 SDS22 SEC7 SKP1 SNF4 SSD1 STB3 STE11 STE12 STE7 STI1 TAP42 TEC1 TEM1 TIF4631 TMA19 TPD3 TSC11 UBA1 UBC6 UBI4 UBR1 UTP10 UTP20 UTP22 UTP7 WTM1 WTM2 YGR130C YKU70 YNL311C YOR283W YPT1
    View Details Qiu et al. (2008) ARP4 ARP5 IES3 INO80 RVB1 RVB2

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run SWC4 No Comments Hazbun TR, et al. (2003)
    View Run TOR2 No Comments Reinke A, et al. (2004)
    View Run SWC4 No Comments Hazbun TR, et al. (2003)
    View Run CEP3 sample cbf3 from feb 2005 Sandall S, et all (2006)
    View Run RLF2 phosphorylation data - cascade search Green EM, et al (2005)
    View Run RLF2 identification data - first search in cascade Green EM, et al (2005)
    View Run ZDS1 Sample 2- cpn2 from june 2005 McCusker D, et al (2007)
    View Run ZDS1 Sample 3 - cpn + atp, from june 2005 McCusker D, et al (2007)
    View Run MLP2 #24 Asynchronous Prep3-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)
    View Run MLP2 #32 Asynchronous Prep-No Phosphopeptide enrichment Keck JM, et al. (2011)
    View Run MLP2 #31 Asynchronous Prep (Protease cleavage) Keck JM, et al. (2011)
    View Run MLP2 #06 Alpha Factor Prep3-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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      PROTEIN(S) PUBLICATION
    View Data RVB1 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..230] PSI-BLAST 80.69897 Membrane fusion atpase p97 N-terminal domain , P97-Nn; Membrane fusion atpase p97, D1 domain; Membrane fusion atpase p97 domain 2, P97-Nc
    2 View Details [231..325] PSI-BLAST 80.69897 Membrane fusion atpase p97 N-terminal domain , P97-Nn; Membrane fusion atpase p97, D1 domain; Membrane fusion atpase p97 domain 2, P97-Nc
    3 View Details [326..463] PSI-BLAST 8.522879 gamma subunit; gamma subunit of DNA polymerase III, N-domain


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.92

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle