| General Information: |
|
| Name(s) found: |
PRP16 /
YKR086W
[SGD]
|
| Description(s) found:
Found 25 descriptions. SHOW ALL |
|
| Organism: | Saccharomyces cerevisiae |
| Length: | 1071 amino acids |
Gene Ontology: |
|
| Cellular Component: |
spliceosomal complex
[TAS ]
|
| Biological Process: |
RNA splicing
[IEA]
generation of catalytic spliceosome for second transesterification step [IMP] mRNA processing [IEA] |
| Molecular Function: |
ATP-dependent RNA helicase activity
[TAS]
|
| Sequence: |
|
| Sequence: [PDR BLAST] [ProtParam] |
1 11 21 31 41 51
| | | | | |
1 MGHSGREERI KDIFKELTSK ELTPGLLLTL QKLAQKPNTN LEQFIASCKA LTKLSSNNPI 60
61 IFNELLELLK NKSEEDSTGP KKIAPSINKR KKFKIQLDLD DNEDELDSPV QKKPAPTRTL 120
121 FKRIDKLKAK QLRQYSPTVK DPSPNSEQQT QNGHAETKDY EPTRSEVVEE DREWYDNDDD 180
181 YGNLVPEPLS ELPEEAKLLP VIRNIDNDDA LRNTVQLYPI PLKQRMEWIP PFLSKFALEN 240
241 KVPTSIIIGS ISETSSQVSA LSMVNPFRNP DSEFSANAKR GSKLVALRRI NMEHIQQSRD 300
301 NTTVLNTAMG EVLGLENNNK AKDKSNQKIC DDTALFTPSK DDIKHTKEQL PVFRCRSQLL 360
361 SLIRENQVVV IIGETGSGKT TQLAQYLYEE GYANDRGKSI VVTQPRRVAA ISVAKRVAME 420
421 MQVPLGKEVG YSIRFEDVTD SECTKLKFVT DGILLRETLL DDTLDKYSCV IIDEAHERSL 480
481 NTDILLGFFK ILLARRRDLK LIITSATMNA KKFSAFFGNA PQFTIPGRTF PVQTIYTSNP 540
541 VQDYVEAAVS QAVKIHLAND CSSGDILIFM TGQEDIETTF DTLQEKFLQV YSKKFGTANF 600
601 EEINDIEILP IYSALPADLQ FKIFQDLHGT KRKIIIATNI AETSLTIKGI RYVIDCGYSK 660
661 LKVYNPKIGL DSLVITPISK ANADQRSGRA GRTAPGTAYR LYTEDTFKED MYLQTIPEIQ 720
721 RTNLSNTLLL LKSLDVTDEL SKFPFIDKPP LQTFLSSLYE LWFIGAIDTS GQLTPLGLQM 780
781 AKFPLQPSLS KILLIAVRNG CSDEMLTIVS MLSVPQVFYR PKERQKEADI ARNKFFIAKS 840
841 DHLTLLNVFE QWRANNFSSH WCNKHFVQYK SLVRARDIRD QLLTILKSQK IPVISSGKDW 900
901 DIIKKCICSG FAHQAAKITG LRNYVHLKTG VSVQLHPTSA LHGLGDLPPY VVYHELLMTS 960
961 KEYICCVTSV DPFWLMEYGG LLYDIKRIKN DQEATTTGLF GEHYEHTLDK VEDDIDINIR1020
1021 RCKDMRDSVI QELKMTDNSN KEDKKQKTKK QNILNGKENS MKPFKRRKPF F |
| PUBLICATION | TOPOLOGY | COCOMPLEXED PROTEINS | |
| View Details | (MIPS) Mewes HW, et al. (2004) |
|
AAR2 BRR1 BRR2 CBC2 CDC40 CWC15 CWC2 CWC22 CWC23 DHR2 LSM4 MAK5 MUD2 PRP16 PRP18 PRP2 PRP22 PRP24 PRP28 PRP31 PRP38 PRP39 PRP4 PRP40 PRP43 PRP5 PRP6 PRP8 SLU7 SMD1 SMD3 SME1 SNP1 SPP2 SPP381 STO1 YHC1 |
| View Details | Krogan NJ, et al. (2006) |
|
AEP3 CDC20 FAB1 FOL2 GZF3 LSP1 NOP13 PIL1 PKH1 PRP16 PSK2 RGC1 RPL9B YLR179C YMR086W YTA6 |
| View Details | Qiu et al. (2008) |
|
AAR2 BRR1 BRR2 CBC2 CDC40 CEF1 CLF1 CUS1 CUS2 CWC15 CWC2 CWC22 CWC23 CWC25 DHR2 DIB1 ECM2 HSH155 HSH49 IST3 ISY1 LEA1 LSM2 LSM3 LSM4 LSM5 LSM6 LUC7 MAK5 MUD1 MUD2 NAM8 NTC20 PRP11 PRP16 PRP18 PRP19 PRP2 PRP21 PRP22 PRP24 PRP28 PRP3 PRP31 PRP38 PRP39 PRP4 PRP40 PRP42 PRP43 PRP46 PRP5 PRP6 PRP8 PRP9 RSE1 SLU7 SMB1 SMD1 SMD2 SMD3 SME1 SMX2 SMX3 SNP1 SNT309 SNU114 SNU23 SNU56 SNU66 SNU71 SPP2 SPP381 SPP382 STO1 SUB2 SYF1 SYF2 YHC1 |
The following runs contain data for this protein:
| BAIT | COMMENTS | PUBLICATION | |
| View Run | No Comments | Schneider, DA, et al. (2006) | |
| View Run | #03 Alpha Factor Prep1-TiO2 Flowthrough | Keck JM, et al. (2011) | |
| View Run | #12 Mitotic Prep1-TiO2 Flowthrough | Keck JM, et al. (2011) | |
| View Run | #02 Alpha Factor Prep1-TiO2 enriched, new search criteria | Keck JM, et al. (2011) | |
| View Run | #30 Asynchronous Prep6-TiO2 Phosphopeptide enrichment | Keck JM, et al. (2011) | |
| View Run | #11 Mitotic Prep1-TiO2 enriched, new search criteria | Keck JM, et al. (2011) |
NOT SHOWING SINGLE HITS. [ Show Single Hits ]
New Feature: Upload Your Own Microscopy Data
| PROTEIN(S) | PUBLICATION | |
| View Data |
|
Huh WK, et al. (2003) |
Domains predicted:
| # | Region(s) | Method | Confidence | Match Description | |
| 1 | View Details | [1..300] |  |
17.445997 | View MSA. No confident structure predictions are available. |
| 2 | View Details | [301..747] | |
62.69897 | Initiation factor 4a |
| 3 | View Details | [748..820] | |
N/A | Confident ab initio structure predictions are available. |
| 4 | View Details | [821..1071] | |
3.165976 | View MSA. No confident structure predictions are available. |
| 5 | View Details | [899..1071] | |
2.562986 | View MSA. No confident structure predictions are available. |
| Protein predicted to be: | GLOBULAR (No transmembrane regions or signal peptide) |
| Confidence of classification: | 0.98 |
Source: Reynolds et al. (2008)