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Protein Overview: NAB3

Protein Complex Data

Mass Spectrometry Data

The following runs contain data for this protein:

  BAIT COMMENTS PUBLICATION
View Run RPA135 his-HA tag on RPA135 Schneider, DA, et al. (2006)
View Run RPA135 No Comments Schneider, DA, et al. (2006)

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

  BAIT PREY HITS PUBLICATION
View Screen PCF11 NAB3 2 Unpublished Fields Lab Data

Microscopy / Localization Data

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  PROTEIN(S) PUBLICATION
View Data NAB3 Huh WK, et al. (2003)

Protein Structure Data


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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..116] deduced N/A No confident structure predictions are available.
2 View Details [117..400] PSI-BLAST 3.154902 Botulinum neurotoxin
3 View Details [401..558] deduced N/A No confident structure predictions are available.
4 View Details [559..802] MSA 35.060997 View MSA. No confident structure predictions are available.
5 View Details [679..802] deduced N/A No confident structure predictions are available.

Functions predicted (by domain):

# Gene Ontology predictions
1
Term Confidence Notes
  • binding
  • 2.40096962515027 bayes_pls_golite062009
  • transcription regulator activity
  • 2.15398264148864 bayes_pls_golite062009
  • nucleic acid binding
  • 1.95513305822187 bayes_pls_golite062009
  • DNA binding
  • 1.80079581406991 bayes_pls_golite062009
  • transcription factor activity
  • 1.15427978494805 bayes_pls_golite062009
  • protein binding
  • 0.757492117682468 bayes_pls_golite062009
    2
    Term Confidence Notes
  • nucleic acid binding
  • 4.65259034341669 bayes_pls_golite062009
  • binding
  • 3.48033873254013 bayes_pls_golite062009
  • RNA binding
  • 2.51560202858525 bayes_pls_golite062009
  • transcription regulator activity
  • 2.2045206027152 bayes_pls_golite062009
  • DNA binding
  • 1.99030664201171 bayes_pls_golite062009
  • mRNA binding
  • 1.52376515340629 bayes_pls_golite062009
  • transcription factor activity
  • 1.09958329302628 bayes_pls_golite062009
  • protein binding
  • 1.05805521997665 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
  • 0.633093884585572 bayes_pls_golite062009
  • sequence-specific DNA binding
  • 0.327072171076297 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle