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Protein Overview: RVB2

General Information:
Name(s) found: RVB2 / YPL235W [SGD]
Description(s) found:
Found 34 descriptions.
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  • Essential protein involved in transcription regulation; component of chromatin remodeling complexes; required for assembly and function of the INO80 complex; also referred to as reptin; member of the RUVB-like protein family [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 471 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    Swr1 complex [IDALink to PubMed articleLink to PubMed articleLink to PubMed article]
    Ino80 complex [IPILink to PubMed article]
    nuclear outer membrane [IMPLink to PubMed article]
    chromatin remodeling complex [IDALink to PubMed article]
    Biological Process: chromatin remodeling [IDALink to PubMed article][IPILink to PubMed article]
    snoRNA metabolic process [IMPLink to PubMed article]
    regulation of transcription from RNA polymerase II promoter [IMPLink to PubMed article]
    Molecular Function: ATPase activity [IMPLink to PubMed article]
    ATP-dependent 5'-3' DNA helicase activity [IDALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIQTSDPNE TSDLKSLSLI AAHSHITGLG LDENLQPRPT SEGMVGQLQA RRAAGVILKM  60
   61 VQNGTIAGRA VLVAGPPSTG KTALAMGVSQ SLGKDVPFTA IAGSEIFSLE LSKTEALTQA 120
  121 FRKSIGIKIK EETELIEGEV VEIQIDRSIT GGHKQGKLTI KTTDMETIYE LGNKMIDGLT 180
  181 KEKVLAGDVI SIDKASGKIT KLGRSFARSR DYDAMGADTR FVQCPEGELQ KRKTVVHTVS 240
  241 LHEIDVINSR TQGFLALFTG DTGEIRSEVR DQINTKVAEW KEEGKAEIVP GVLFIDEVHM 300
  301 LDIECFSFIN RALEDEFAPI VMMATNRGVS KTRGTNYKSP HGLPLDLLDR SIIITTKSYN 360
  361 EQEIKTILSI RAQEEEVELS SDALDLLTKT GVETSLRYSS NLISVAQQIA MKRKNNTVEV 420
  421 EDVKRAYLLF LDSARSVKYV QENESQYIDD QGNVQISIAK SADPDAMDTT E

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Riffle et al. (2010) (Unpublished Data) ARP4 ARP5 ARP6 ARP8 BDF1 IES1 IES2 IES3 IES5 INO80 NHP10 PIH1 RVB1 RVB2 SWC3 SWC4 SWC5 SWC7 SWR1 TAH1 VPS71 VPS72 YAF9
    View Details Hazbun TR, et al. (2003) ARP4 EAF1 EAF5 EPL1 ESA1 RVB1 RVB2 SWC4 SWR1 TRA1 YAF9 YNG2
    View Details Krogan NJ, et al. (2006) ARP4 ARP5 ARP6 ARP8 CCA1 EAF1 EAF5 EAF6 EAF7 EPL1 ESA1 IES1 IES2 IES3 IES4 IES5 IES6 INO80 NHP10 NTO1 PIH1 RVB1 RVB2 SAS3 SWC3 SWC4 SWC5 SWC7 SWR1 TAH1 TRA1 VPS71 VPS72 YAF9 YNG2
    View Details Gavin AC, et al. (2006) FUR1 PMR1 RVB2 SEC53
    View Details Gavin AC, et al. (2002) AAR2 ACT1 ADA2 ADE5,7 ADH1 AHA1 AMN1 ARO1 ARP4 ARP8 ATP11 BET3 BET5 BRR1 BUD31 CAB3 CAF130 CAF40 CCR4 CCT6 CCT8 CDC33 CDC36 CDC39 CEF1 CHD1 CKA1 CKA2 CKB1 CKB2 CLF1 CLU1 CMR1 COP1 CPA2 CPR1 CSN12 CUS1 CWC2 CWC22 CWC23 DHH1 DIB1 DNA2 ECM2 ESC8 ESP1 FAS2 FKS1 FUN19 GCN1 GCN2 GCN20 GCN5 GFA1 GSG1 GTR2 GUS1 HDA1 HDA2 HDA3 HEM13 HHF1, HHF2 HOS2 HOS4 HOT1 HSC82 HSH155 HTA1 IDH2 IES1 IES5 ILV1 IMG1 INO80 IOC3 IRR1 ISW1 ISW2 ITC1 KAP114 KAP123 KAP95 KRE11 LCD1 LEA1 LIN1 LSM1 LSM2 LSM4 LSM5 LSM6 LSM7 LUC7 MCD1 MDM10 MEC1 MED4 MES1 MGM101 MKT1 MLH1 MNN4 MOT1 MOT2 MPH1 MPM1 MRP7 MRPL28 MRPL3 MRPL35 MRPL38 MRPL4 MRPL8 MRPS5 MSH2 MSH3 MSH6 MSL1 MUD1 MYO1 NGG1 NHP10 NIP1 NOP1 NOP12 NOT3 NOT5 NPL6 OLA1 PAT1 PDC1 PFK1 PFK2 PGK1 PIN4 PMS1 POL1 POL12 POP2 PRI1 PRI2 PRO2 PRP11 PRP18 PRP19 PRP21 PRP24 PRP28 PRP3 PRP31 PRP38 PRP39 PRP4 PRP40 PRP42 PRP43 PRP46 PRP6 PRP8 PRP9 PRT1 PSK1 PTC1 PUF6 RAD16 RAD51 RAD52 REB1 RET1 RFA1 RFA2 RFA3 RFX1 RIM1 RNH1 RNR2 RPA135 RPB2 RPC34 RPC40 RPG1 RPN9 RPO21 RPO31 RPT3 RPT5 RPT6 RSC2 RSC3 RSC4 RSC58 RSC6 RSC8 RSE1 RVB2 SAM1 SCC4 SEC27 SET3 SFH1 SGF29 SGF73 SGS1 SHS1 SIF2 SIN3 SIN4 SKN1 SLU7 SMB1 SMC1 SMC3 SMD1 SMD2 SMD3 SME1 SMX2 SMX3 SNF2 SNP1 SNT1 SNT309 SNU114 SNU23 SNU56 SNU66 SNU71 SPP381 SPP382 SPT15 SPT16 SPT20 SPT7 SPT8 SRB2 SSA4 STH1 STO1 SYF1 TAF1 TAF10 TAF11 TAF12 TAF13 TAF14 TAF2 TAF3 TAF4 TAF5 TAF6 TAF7 TAF8 TAF9 TBF1 TEF4 TFC7 TFP1 TIF1, TIF2 TIF35 TOM40 TOP1 TOP3 TOS4 TRS120 TRS130 TRS20 TRS23 TRS31 TRS33 UTP21 UTP22 VAS1 VPS1 YBR090C-A, NHP6B YBR287W YCH1 YCR015C YHB1 YHR122W YML6 YRA1 YTA7
    View Details Ho Y, et al. (2002) ACC1 ARC35 ARG1 ARP2 BGL2 CDC33 COR1 DMC1 DPM1 HSM3 KGD2 KRS1 LIA1 LPD1 MDJ1 NAS6 NOP14 PMI40 RPN13 RPN14 RPT4 RVB1 RVB2 RVS161 RVS167 SES1 SHS1 TRP3 TRP5 YHR033W
    View Details Qiu et al. (2008) ARP4 RVB1 RVB2

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run SWC4 No Comments Hazbun TR, et al. (2003)
    View Run SWC4 No Comments Hazbun TR, et al. (2003)
    View Run MIH1 experimental1 - mih1-1 McCusker D, et al (2007)
    View Run CEP3 sample cbf3 from feb 2005 Sandall S, et all (2006)
    View Run RLF2 cac1: TAP-tagged Green EM, et al (2005)
    View Run RPA135 No Comments Schneider, DA, et al. (2006)
    View Run RLF2 identification data - first search in cascade Green EM, et al (2005)
    View Run ZDS1 Sample 2- cpn2 from june 2005 McCusker D, et al (2007)
    View Run ZDS1 Sample 3 - cpn + atp, from june 2005 McCusker D, et al (2007)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..224] PSI-BLAST 69.522879 Membrane fusion atpase p97 N-terminal domain , P97-Nn; Membrane fusion atpase p97, D1 domain; Membrane fusion atpase p97 domain 2, P97-Nc
    2 View Details [225..282] PSI-BLAST 69.522879 Membrane fusion atpase p97 N-terminal domain , P97-Nn; Membrane fusion atpase p97, D1 domain; Membrane fusion atpase p97 domain 2, P97-Nc
    3 View Details [283..471] PSI-BLAST 8.09691 gamma subunit; gamma subunit of DNA polymerase III, N-domain


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle