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Peptides for Scan

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pLink demo search -- Yeast γ-Tubulin Complex (20)
Linker: bs3
Search Program:
pLink Version Unknown
Upload date: 2016-03-25 21:16:22
FASTA file: gTuSC-parsimonious-plusRev.fasta
PSM Filters:

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PSM Filters

E-value (pLink)
value has to be a decimal number
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Cutoff value is not valid
Kojak demo search -- Yeast γ-Tubulin Complex (21)
Linker: dss
Search Programs:
kojak 1.3.7-dev
percolator 2.08
Upload date: 2016-03-25 21:45:27
FASTA file: gTuSC-parsimonious-plusRev.fasta
PSM Filters:

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PSM Filters

PEP (percolator)
value has to be a decimal number
Pep. Diff. (kojak)
value has to be a decimal number
SVM Score (percolator)
value has to be a decimal number
Score (kojak)
value has to be a decimal number
dScore (kojak)
value has to be a decimal number
p-value (percolator)
value has to be a decimal number
q-value (percolator)
value has to be a decimal number
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Cutoff value is not valid
Peptide Filters:

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Peptide Filters

PEP (percolator)
value has to be a decimal number
SVM Score (percolator)
value has to be a decimal number
p-value (percolator)
value has to be a decimal number
q-value (percolator)
value has to be a decimal number
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Cutoff value is not valid
Crux (search-for-xlinks) search -- Yeast γ-Tubulin Complex (22)
Linker: dss
Search Program:
Crux 2.1
Upload date: 2016-03-28 00:46:17
FASTA file: gTuSC-parsimonious-plusRev.fasta
PSM Filters:

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PSM Filters

fdr b-h (Crux)
value has to be a decimal number
fdr decoy (Crux)
value has to be a decimal number
p-value (Crux)
value has to be a decimal number
p-value bonf. (Crux)
value has to be a decimal number
q-value b-h (Crux)
value has to be a decimal number
q-value decoy (Crux)
value has to be a decimal number
xcorr score (Crux)
value has to be a decimal number
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Cutoff value is not valid
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Cutoff value is not valid

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Peptides ():

[Download Data] Choose file format: Tab-delimited peptide data Tab-delimited PSM data Peptides for Skyline PRM methods (Chavez et al) Peptides for Skyline Quantitation (Shulman et al)
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Search:
PSM Data
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Calculated Mass (pLink)
Delta Mass (pLink)
Delta Mass (PPM) (pLink)
E-value (pLink)
PSM Data
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dScore (kojak)
Obs Mass (kojak)
p-value (percolator)
PEP (percolator)
Pep. Diff. (kojak)
PPM Error (kojak)
PSM Mass (kojak)
q-value (percolator)
Ret Time (kojak)
Scan Number (percolator)
Score (kojak)
SVM Score (percolator)
Peptide Data
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p-value (percolator)
PEP (percolator)
q-value (percolator)
SVM Score (percolator)
PSM Data
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fdr b-h (Crux)
fdr decoy (Crux)
ion current total (Crux)
mass error(ppm) (Crux)
p-value (Crux)
p-value bonf. (Crux)
peptide mass average (Crux)
peptide mass mono (Crux)
q-value b-h (Crux)
q-value decoy (Crux)
spectrum neutral mass (Crux)
spectrum precursor m/z (Crux)
xcorr score (Crux)
Note: scores noted with a + represent the best of multiple scores for this peptide in the search.
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