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pLink demo search -- Yeast γ-Tubulin Complex (20)
Linker: bs3
Search Program:
pLink Version Unknown
Upload date: 2016-03-25 21:16:22
FASTA file: gTuSC-parsimonious-plusRev.fasta
PSM Filters:

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PSM Filters

E-value (pLink)
value has to be a decimal number
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Cutoff value is not valid
Kojak demo search -- Yeast γ-Tubulin Complex (21)
Linker: dss
Search Programs:
kojak 1.3.7-dev
percolator 2.08
Upload date: 2016-03-25 21:45:27
FASTA file: gTuSC-parsimonious-plusRev.fasta
PSM Filters:

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PSM Filters

PEP (percolator)
value has to be a decimal number
Pep. Diff. (kojak)
value has to be a decimal number
SVM Score (percolator)
value has to be a decimal number
Score (kojak)
value has to be a decimal number
dScore (kojak)
value has to be a decimal number
p-value (percolator)
value has to be a decimal number
q-value (percolator)
value has to be a decimal number
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Cutoff value is not valid
Peptide Filters:

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Peptide Filters

PEP (percolator)
value has to be a decimal number
SVM Score (percolator)
value has to be a decimal number
p-value (percolator)
value has to be a decimal number
q-value (percolator)
value has to be a decimal number
X
Cutoff value is not valid
Crux (search-for-xlinks) search -- Yeast γ-Tubulin Complex (22)
Linker: dss
Search Program:
Crux 2.1
Upload date: 2016-03-28 00:46:17
FASTA file: gTuSC-parsimonious-plusRev.fasta
PSM Filters:

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PSM Filters

fdr b-h (Crux)
value has to be a decimal number
fdr decoy (Crux)
value has to be a decimal number
p-value (Crux)
value has to be a decimal number
p-value bonf. (Crux)
value has to be a decimal number
q-value b-h (Crux)
value has to be a decimal number
q-value decoy (Crux)
value has to be a decimal number
xcorr score (Crux)
value has to be a decimal number
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Cutoff value is not valid
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Cutoff value is not valid

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PSM Data
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Calculated Mass (pLink)
Delta Mass (pLink)
Delta Mass (PPM) (pLink)
E-value (pLink)
PSM Data
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dScore (kojak)
Obs Mass (kojak)
p-value (percolator)
PEP (percolator)
Pep. Diff. (kojak)
PPM Error (kojak)
PSM Mass (kojak)
q-value (percolator)
Ret Time (kojak)
Scan Number (percolator)
Score (kojak)
SVM Score (percolator)
Peptide Data
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p-value (percolator)
PEP (percolator)
q-value (percolator)
SVM Score (percolator)
PSM Data
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fdr b-h (Crux)
fdr decoy (Crux)
ion current total (Crux)
mass error(ppm) (Crux)
p-value (Crux)
p-value bonf. (Crux)
peptide mass average (Crux)
peptide mass mono (Crux)
q-value b-h (Crux)
q-value decoy (Crux)
spectrum neutral mass (Crux)
spectrum precursor m/z (Crux)
xcorr score (Crux)
Protein Residues Sequence Coverage Count of Linkable Residues Linkable Residues Covered Linkable Residues Coverage M+L+C Residues M+L+C Coverage L+C Residues L+C Coverage M Residues M Coverage L Residues L Coverage C Residues C Coverage
Column Header Column Description
Protein
Residues Count of Residues
Sequence Coverage Sequence Coverage
Linkable Residues Count of Linkable Residues
Linkable Residues Covered Count of Linkable Residues covered by Sequence Coverage
Linkable Residues Coverage Fraction of Linkable Residues covered by Sequence Coverage
M+L+C Residues Count of Monolinks, Looplinks and Crosslinks Residues
M+L+C Coverage Fraction of Linkable Residues covered by Monolinks, Looplinks and Crosslinks
L+C Residues Count of Looplinks and Crosslinks Residues
L+C Coverage Fraction of Linkable Residues covered by Looplinks and Crosslinks
M Residues Count of Monolinks Residues
M Coverage Fraction of Linkable Residues covered by Monolinks
L Residues Count of Looplinks Residues
L Coverage Fraction of Linkable Residues covered by Looplinks
C Residues Count of Crosslinks Residues
C Coverage Fraction of Linkable Residues covered by Crosslinks
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