element psm

diagram
properties	content  complex
children	filterable_psm_annotations descriptive_psm_annotations
used by	element  psms
attributes	Name   Type   Use   Default   Fixed   Annotation scan_file_name   xs:string            documentation (Optional) The filename of the file in which this scan may be found. Will be used to locate the spectrum associated with this PSM when data are uploaded. scan_number   xs:positiveInteger            documentation (Optional) The scan number used to look up the scan in the given file. Will be used to locate the spectrum associated with this PSM when data are uploaded. precursor_charge   xs:positiveInteger            documentation (Optional) The predicted charge of the precursor ion. Used for accurately annotating spectra in web interface. linker_mass   mass            documentation (Optional) If this PSM identified a looplinked peptide or crosslinked peptidie pair, this is the mass used for the crosslinker in this identification. Used for accurately annotating spectra in web interface.
identity constraints	Name   Refer   Selector   Field(s)   Annotation unique   psm_program_score_unique      */*   @search_program   @annotation_name   documentation Ensure a PSM only has one score for a given name from a given search program.
annotation	documentation A PSM
source	<xs:element name="psm">   <xs:annotation>     <xs:documentation>A PSM</xs:documentation>   </xs:annotation>   <xs:complexType>     <xs:sequence>       <xs:element ref="filterable_psm_annotations"/>       <xs:element ref="descriptive_psm_annotations" minOccurs="0">         <xs:annotation>           <xs:documentation>The descriptive annotations (numeric or string) assigned to the peptide spectrum match (PSM) that are not meant to describe the quality of the match or filter out poor matches.</xs:documentation>         </xs:annotation>       </xs:element>     </xs:sequence>     <xs:attribute name="scan_file_name" type="xs:string">       <xs:annotation>         <xs:documentation>(Optional) The filename of the file in which this scan may be found. Will be used to locate the spectrum associated with this PSM when data are uploaded.</xs:documentation>       </xs:annotation>     </xs:attribute>     <xs:attribute name="scan_number" type="xs:positiveInteger">       <xs:annotation>         <xs:documentation>(Optional) The scan number used to look up the scan in the given file. Will be used to locate the spectrum associated with this PSM when data are uploaded.</xs:documentation>       </xs:annotation>     </xs:attribute>     <xs:attribute name="precursor_charge" type="xs:positiveInteger">       <xs:annotation>         <xs:documentation>(Optional) The predicted charge of the precursor ion. Used for accurately annotating spectra in web interface.</xs:documentation>       </xs:annotation>     </xs:attribute>     <xs:attribute name="linker_mass" type="mass">       <xs:annotation>         <xs:documentation>(Optional) If this PSM identified a looplinked peptide or crosslinked peptidie pair, this is the mass used for the crosslinker in this identification. Used for accurately annotating spectra in web interface.</xs:documentation>       </xs:annotation>     </xs:attribute>   </xs:complexType>   <xs:unique name="psm_program_score_unique">     <xs:annotation>       <xs:documentation>Ensure a PSM only has one score for a given name from a given search program.</xs:documentation>     </xs:annotation>     <xs:selector xpath="*/*"/>     <xs:field xpath="@search_program"/>     <xs:field xpath="@annotation_name"/>   </xs:unique> </xs:element>

attribute psm/@scan_file_name

type	xs:string
annotation	documentation (Optional) The filename of the file in which this scan may be found. Will be used to locate the spectrum associated with this PSM when data are uploaded.
source	<xs:attribute name="scan_file_name" type="xs:string">   <xs:annotation>     <xs:documentation>(Optional) The filename of the file in which this scan may be found. Will be used to locate the spectrum associated with this PSM when data are uploaded.</xs:documentation>   </xs:annotation> </xs:attribute>

attribute psm/@scan_number

type	xs:positiveInteger
annotation	documentation (Optional) The scan number used to look up the scan in the given file. Will be used to locate the spectrum associated with this PSM when data are uploaded.
source	<xs:attribute name="scan_number" type="xs:positiveInteger">   <xs:annotation>     <xs:documentation>(Optional) The scan number used to look up the scan in the given file. Will be used to locate the spectrum associated with this PSM when data are uploaded.</xs:documentation>   </xs:annotation> </xs:attribute>

attribute psm/@precursor_charge

type	xs:positiveInteger
annotation	documentation (Optional) The predicted charge of the precursor ion. Used for accurately annotating spectra in web interface.
source	<xs:attribute name="precursor_charge" type="xs:positiveInteger">   <xs:annotation>     <xs:documentation>(Optional) The predicted charge of the precursor ion. Used for accurately annotating spectra in web interface.</xs:documentation>   </xs:annotation> </xs:attribute>

attribute psm/@linker_mass

type	mass
annotation	documentation (Optional) If this PSM identified a looplinked peptide or crosslinked peptidie pair, this is the mass used for the crosslinker in this identification. Used for accurately annotating spectra in web interface.
source	<xs:attribute name="linker_mass" type="mass">   <xs:annotation>     <xs:documentation>(Optional) If this PSM identified a looplinked peptide or crosslinked peptidie pair, this is the mass used for the crosslinker in this identification. Used for accurately annotating spectra in web interface.</xs:documentation>   </xs:annotation> </xs:attribute>

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