YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|1827787, gi\|1...
Organism:	Homo sapiens
Length:	218 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|1827787, gi|1....

Description	E-value	Query Range	Subject Range
gi\|48479264 - gi\|48479264\|gb\|AAT44903.1\| matrix metalloproteinase 2 [Tupaia belangeri]	265.0	[0..1]	[218..443]
gi\|61368087 - gi\|61368087\|gb\|AAX43100.1\| matrix metalloproteinase 2 [synthetic construct]	264.0	[0..1]	[218..443]
MMP2 - matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase) gi\|123996925, gi... - gi\|60655143\|gb\|AAX32135.1\| matrix metalloproteinase 2 [synthetic construct], gi\|168278072\|dbj\|BAG110...	264.0	[0..1]	[218..443]
MMP2_BOVIN - 72 kDa type IV collagenase OS=Bos taurus GN=MMP2 PE=2 SV=1	263.0	[0..1]	[218..444]
gi\|109128539 - gi\|109128539\|ref\|XP_001087939.1\| PREDICTED: similar to matrix metalloproteinase 2 preproprotein isof...	263.0	[0..1]	[218..443]
gi\|50758583 - gi\|50758583\|ref\|XP_417326.1\| PREDICTED: similar to Matrix metalloproteinase-24 precursor (MMP-24) (M...	263.0	[0..5]	[218..812]
gi\|114662548 - gi\|114662548\|ref\|XP_001167520.1\| PREDICTED: matrix metalloproteinase 2 isoform 4 [Pan troglodytes]	262.0	[0..1]	[218..443]

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Predicted Domain #1

Region A:
Residues: [1-218]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ELYGASPDID LGTGPTPTLG PVTPEICKQD IVFDGIAQIR GEIFFFKDRF IWRTVTPRDK  60
   61 PMGPLLVATF WPELPEKIDA VYEAPQEEKA VFFAGNEYWI YSASTLERGY PKPLTSLGLP 120
  121 PDVQRVDAAF NWSKNKKTYI FAGDKFWRYN EVKKKMDPGF PKLIADAWNA IPDNLDAVVD 180
  181 LQGGGHSYFF KGAYYLKLEN QSLKSVKFGS IKSDWLGC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	69.69897
Match:	1ck7A
Description:	Gelatinase A (MMP-2); Gelatinase A (MMP-2), C-terminal domain; Gelatinase A; Gelatinase A (MMP-2) type II modules
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits