YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|21465971
Organism:	Escherichia coli
Length:	61 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21465971.

Description	E-value	Query Range	Subject Range
ATPF_SHEDO - ATP synthase subunit b OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=atp...	72.0	[0..1]	[61..62]
SO4751 - ATP synthase F0 B subunit ATPF_SHEON - ATP synthase subunit b OS=Shewanella oneidensis (strain MR-1) GN=atpF PE=3 SV=1	72.0	[0..1]	[61..62]
ATPF_SHEB9 - ATP synthase subunit b OS=Shewanella baltica (strain OS195) GN=atpF PE=3 SV=1 gi\|217975452, gi... - gi\|217975452\|ref\|YP_002360203.1\| F0F1 ATP synthase subunit B [Shewanella baltica OS223], gi\|21750058... ATPF_SHEB8 - ATP synthase subunit b OS=Shewanella baltica (strain OS185) GN=atpF PE=3 SV=1	71.0	[0..1]	[61..62]
ATPF_SHEB5 - ATP synthase subunit b OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=atpF PE=3 SV=1	71.0	[0..1]	[61..62]
ATPF_SHEFN - ATP synthase subunit b OS=Shewanella frigidimarina (strain NCIMB 400) GN=atpF PE=3 SV=1	71.0	[0..1]	[61..62]
gi\|90409085, gi\|... - gi\|90409085\|ref\|ZP_01217209.1\| ATP synthase subunit B [Psychromonas sp. CNPT3], gi\|90309812\|gb\|EAS37...	70.0	[0..1]	[61..62]
ATPF_COREF - ATP synthase subunit b OS=Corynebacterium efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM 1118... ATPF_COREF - ATP synthase subunit b OS=Corynebacterium efficiens GN=atpF PE=3 SV=1	68.0	[0..2]	[61..88]
gi\|90332713, gi\|... - gi\|90415390\|ref\|ZP_01223324.1\| ATP synthase B chain [marine gamma proteobacterium HTCC2207], gi\|9033... gi\|90415390\|ref\|... - ATP synthase B chain [marine gamma proteobacterium HTCC2207]	68.0	[0..1]	[60..62]
ATPF_BLOPB - ATP synthase subunit b OS=Blochmannia pennsylvanicus (strain BPEN) GN=atpF PE=3 SV=1	68.0	[0..4]	[61..65]
ATPF_CORGL - ATP synthase subunit b OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG... ATPF_CORGL - ATP synthase subunit b OS=Corynebacterium glutamicum GN=atpF PE=3 SV=1	67.0	[0..2]	[61..86]

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Predicted Domain #1

Region A:
Residues: [1-61]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDQLKKAKAE AQVIIEQANK RRSQILDEAK AEAEQERTKI VAQAQAEIEA ERKRAREELR  60
   61 K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	10.0
Match:	1l2pA
Description:	F1F0 ATP synthase subunit B, membrane domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits