| Protein: | TFB1A_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 591 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TFB1A_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
575.0 | [0..31] | [582..1] |
|
|
572.0 | [0..6] | [583..11] |
|
|
572.0 | [0..6] | [583..11] |
|
|
571.0 | [0..6] | [583..11] |
|
|
571.0 | [0..6] | [583..11] |
|
|
569.0 | [0..6] | [583..11] |
|
|
568.0 | [0..6] | [583..11] |
|
|
565.0 | [0..6] | [583..11] |
|
Region A: Residues: [1-113] |
1 11 21 31 41 51
| | | | | |
1 MAGGQIEKLV KYKSTVKDPG TPGFLRIREG MLLFVPNDPK SDSKLKVLTQ NIKSQKYTKE 60
61 GSNKPPWLNL TNKQAKSHIF EFENYPDMHA CRDFITKALA KCELEPNKSV VST
|
| Detection Method: |  |
| Confidence: | 24.09691 |
| Match: | 1pfjA |
| Description: | Solution structure of the N-terminal PH/PTB domain of the TFIIH P62 subunit |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [114-148] |
1 11 21 31 41 51
| | | | | |
1 SSEQLSIKEL ELRFKLLREN SELQRLHKQF VESKV
|
| Detection Method: | |
| Confidence: | 11.09691 |
| Match: | 2diiA |
| Description: | No description for 2diiA was found. |
|
Region A: Residues: [149-291] |
1 11 21 31 41 51
| | | | | |
1 LTEDEFWATR KKLLGKDSIR KSKQQLGLKS MMVSGIKPST DGRTNRVTFN LTPEIIFQIF 60
61 AEKPAVRQAF INYVPSKMTE KDFWTKYFRA EYLYSTKNTA VAAAEAAEDE ELAVFLKPDE 120
121 ILARETRHKI RRVDPTLDME ADQ
|
| Detection Method: | |
| Confidence: | 1.78 |
| Match: | 1x3aA |
| Description: | Solution structure of the BSD domain of human Synapse associated protein 1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [292-356] |
1 11 21 31 41 51
| | | | | |
1 GDDYTHLMDH GIQRDGTMDV VEPQNDQFKR SLLQDLNRHA AVVLEGRSID VESEDTRIVA 60
61 EALTR
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.491 | a.189.1 | Description not found. |
| View | Download | 0.482 | a.3.1 | Cytochrome c |
| View | Download | 0.442 | a.65.1 | Annexin |
| View | Download | 0.442 | a.65.1 | Annexin |
| View | Download | 0.408 | a.189.1 | Description not found. |
| View | Download | 0.406 | d.169.1 | C-type lectin-like |
| View | Download | 0.341 | d.169.1 | C-type lectin-like |
| View | Download | 0.333 | a.3.1 | Cytochrome c |
|
Region A: Residues: [357-486] |
1 11 21 31 41 51
| | | | | |
1 VKQVSKADGE TTKDANQERL ERMSRVAGME DLQAPQNFPL APLSIKDPRD YFESQQGNVL 60
61 NVPRGAKGLK RNVHEAYGLL KESILEIRAT GLSDPLIKPE VSFEVFSSLT RTIATAKNIN 120
121 GKNPRESFLD
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.636 | N/A | N/A | a.29.16 | Description not found. |
| View | Download | 0.578 | N/A | N/A | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.523 | N/A | N/A | a.29.13 | Description not found. |
| View | Download | 0.492 | N/A | N/A | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.492 | N/A | N/A | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.489 | N/A | N/A | a.29.13 | Description not found. |
| View | Download | 0.469 | N/A | N/A | a.29.13 | Description not found. |
| View | Download | 0.468 | N/A | N/A | a.7.8 | GAT domain |
| View | Download | 0.405 | N/A | N/A | a.7.1 | Spectrin repeat |
| View | Download | 0.367 | N/A | N/A | a.7.1 | Spectrin repeat |
|
Region A: Residues: [487-591] |
1 11 21 31 41 51
| | | | | |
1 RLPKSTKDEV LHHWTSIQEL LKHFWSSYPI TTTYLHTKVG KLKDAMSNTY SKLEAMKESV 60
61 QSDLRHQVSL LVRPMQQALD AAFHHYEVDL QRRTAKSGER PNGYV
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.986 | N/A | N/A | a.8.11 | Description not found. |
| View | Download | 0.984 | N/A | N/A | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.979 | N/A | N/A | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.979 | N/A | N/A | a.7.16 | Description not found. |
| View | Download | 0.977 | N/A | N/A | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.976 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.974 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.974 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.971 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.970 | N/A | N/A | a.47.2 | t-snare proteins |
