| Protein: | gi|30696352 |
| Organism: | Arabidopsis thaliana |
| Length: | 662 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30696352.
| Description | E-value | Query Range |
Subject Range |
|
|
722.0 | [0..1] | [662..1] |
|
|
645.0 | [0..1] | [656..1] |
|
|
627.0 | [0..17] | [658..21] |
|
Region A: Residues: [1-98] |
1 11 21 31 41 51
| | | | | |
1 MAASNHSSGK PGGVLSDALC RELWHACAGP LVTLPREGER VYYFPEGHME QLEASMHQGL 60
61 EQQMPSFNLP SKILCKVINI QRRAEPETDE VYAQITLL
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.328 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.274 | N/A | N/A | d.58.58 | Description not found. |
| View | Download | 0.247 | N/A | N/A | c.114.1 | YchN-like |
| View | Download | 0.229 | N/A | N/A | d.93.1 | SH2 domain |
| View | Download | 0.227 | N/A | N/A | b.124.1 | Hypothetical protein Aq 1857 |
| View | Download | 0.211 | N/A | N/A | c.44.2 | Enzyme IIB-cellobiose |
|
Region A: Residues: [99-236] |
1 11 21 31 41 51
| | | | | |
1 PELDQSEPTS PDAPVQEPEK CTVHSFCKTL TASDTSTHGG FSVLRRHADD CLPPLDMSQQ 60
61 PPWQELVATD LHNSEWHFRH IFRGQPRRHL LTTGWSVFVS SKKLVAGDAF IFLRGENEEL 120
121 RVGVRRHMRQ QTNIPSSV
|
| Detection Method: | |
| Confidence: | 34.221849 |
| Match: | 1widA |
| Description: | Solution Structure of the B3 DNA-Binding Domain of RAV1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [237-399] |
1 11 21 31 41 51
| | | | | |
1 ISSHSMHIGV LATAAHAITT GTIFSVFYKP RTSRSEFIVS VNRYLEAKTQ KLSVGMRFKM 60
61 RFEGEEAPEK RFSGTIVGVQ ENKSSVWHDS EWRSLKVQWD EPSSVFRPER VSPWELEPLV 120
121 ANSTPSSQPQ PPQRNKRPRP PGLPSPATGP SGPDGVWKSP ADT
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [400-476] |
1 11 21 31 41 51
| | | | | |
1 PSSVPLFSPP AKAATFGHGG NKSFGVSIGS AFWPTNADSA AESFASAFNN ESTEKKQTNG 60
61 NVCRLFGFEL VENVNVD
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.381 | a.64.1 | Saposin |
| View | Download | 0.284 | a.190.1 | Description not found. |
| View | Download | 0.217 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.216 | a.4.5 | "Winged helix" DNA-binding domain |
|
Region A: Residues: [477-662] |
1 11 21 31 41 51
| | | | | |
1 ECFSAASVSG AVAVDQPVPS NEFDSGQQSE PLNINQSDIP SGSGDPEKSS LRSPQESQSR 60
61 QIRSCTKVHM QGSAVGRAID LTRSECYEDL FKKLEEMFDI KGELLESTKK WQVVYTDDED 120
121 DMMMVGDDPW NEFCGMVRKI FIYTPEEVKK LSPKNKLAVN ARMQLKADAE ENGNTEGRSS 180
181 SMAGSR
|
| Detection Method: | |
| Confidence: | 1.1 |
| Match: | 1ip9A |
| Description: | Bud emergence mediator Bemp1 |
Matching Structure (courtesy of the PDB): |
|
