| Protein: | U2A2B_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 589 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for U2A2B_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
288.0 | [0..199] | [589..43] |
|
Region A: Residues: [1-247] |
1 11 21 31 41 51
| | | | | |
1 MMSYEGNGDG VAISTENHNE NYISLESSPF HEDSKSRESH DLKKDSSKIS EKDNENGRDK 60
61 DGNKDRDREK DRDREKSRDR DREKSRDRDR DRERSKDRQR DRHHRDRHRD RSRERSEKRD 120
121 DLDDDHHRRS RDRDRRRSRD RDREVRHRRR SRSRSRSRSE RRSRSEHRHK SEHRSRSRSR 180
181 SRSKSKRRSG FDMAPPDMLA ATAVAAAGQV PSVPTTATIP GMFSNMFPMV PGQQLGALPV 240
241 LPVQAMT
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [248-361] |
1 11 21 31 41 51
| | | | | |
1 QQATRHARRV YVGGLPPTAN EQSVSTFFSQ VMSAIGGNTA GPGDAVVNVY INHEKKFAFV 60
61 EMRSVEEASN AMALDGIILE GVPVKVRRPT DYNPSLAATL GPSQPNPNLN LGAV
|
| Detection Method: | |
| Confidence: | 33.522879 |
| Match: | 2g4bA |
| Description: | No description for 2g4bA was found. |
|
Region A: Residues: [362-465] |
1 11 21 31 41 51
| | | | | |
1 GLSSGSTGGL EGPDRIFVGG LPYYFTEVQI RELLESFGPL RGFNLVKDRE TGNSKGYAFC 60
61 VYQDPSVTDI ACAALNGIKM GDKTLTVRRA IQGAIQPKPE QEEV
|
| Detection Method: | |
| Confidence: | 20.221849 |
| Match: | 2u2fA |
| Description: | Splicing factor U2AF 65 KDa subunit |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
| 6.62953239642182 | bayes_pls_golite062009 | |
| mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
| nucleic acid binding | 4.92126426323641 | bayes_pls_golite062009 |
| snRNA binding | 4.06596327298973 | bayes_pls_golite062009 |
| binding | 3.64400841800969 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 3.11990160533699 | bayes_pls_golite062009 |
| U1 snRNA binding | 3.02511982045347 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
| transcription regulator activity | 1.92450390013691 | bayes_pls_golite062009 |
| DNA binding | 1.8021593476478 | bayes_pls_golite062009 |
| structural molecule activity | 1.29928829870122 | bayes_pls_golite062009 |
| transcription factor activity | 1.15127506309683 | bayes_pls_golite062009 |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.591700155096213 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.425042944899091 | bayes_pls_golite062009 |
| transporter activity | 0.417047632648771 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.383589644462932 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.288834004308736 | bayes_pls_golite062009 |
| transmembrane transporter activity | 0.288804044686487 | bayes_pls_golite062009 |
| snoRNA binding | 0.0568636182001701 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.00171911393626201 | bayes_pls_golite062009 |
|
Region A: Residues: [466-589] |
1 11 21 31 41 51
| | | | | |
1 LLYAQQQIAL QRLMFQPGGT PTKIVCLTQV VTADDLRDDE EYAEIMEDMR QEGGKFGNLV 60
61 NVVIPRPNPD HDPTPGVGKV FLEYADVDGS SKARSGMNGR KFGGNQVVAV YYPEDKYAQG 120
121 DYED
|
| Detection Method: | |
| Confidence: | 15.30103 |
| Match: | 1o0pA |
| Description: | Splicing factor U2AF 65 KDa subunit |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
| 6.62953239642182 | bayes_pls_golite062009 | |
| mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
| nucleic acid binding | 4.92126426323641 | bayes_pls_golite062009 |
| snRNA binding | 4.06596327298973 | bayes_pls_golite062009 |
| binding | 3.64400841800969 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 3.11990160533699 | bayes_pls_golite062009 |
| U1 snRNA binding | 3.02511982045347 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
| transcription regulator activity | 1.92450390013691 | bayes_pls_golite062009 |
| DNA binding | 1.8021593476478 | bayes_pls_golite062009 |
| structural molecule activity | 1.29928829870122 | bayes_pls_golite062009 |
| transcription factor activity | 1.15127506309683 | bayes_pls_golite062009 |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.591700155096213 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.425042944899091 | bayes_pls_golite062009 |
| transporter activity | 0.417047632648771 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.383589644462932 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.288834004308736 | bayes_pls_golite062009 |
| transmembrane transporter activity | 0.288804044686487 | bayes_pls_golite062009 |
| snoRNA binding | 0.0568636182001701 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.00171911393626201 | bayes_pls_golite062009 |
