YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: hth-PA
Organism: Drosophila melanogaster
Length: 472 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for hth-PA.

Description E-value Query
Range
Subject
Range
hth-PB - The gene homothorax is referred to in FlyBase by the symbol Dmel\hth (CG17117, FBgn0001235). It is a...
435.0 [0..1] [472..1]

Back

Predicted Domain #1
Region A:
Residues: [1-99]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQPRYDDGL HGYGMDSGAA AAAMYDPHAG HRPPGLQGLP SHHSPHMTHA AAAAATVGMH  60
   61 GYHSGAGGHG TPSHVSPVGN HLMGAIPEVH KRDKDAIYE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [100-237]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HPLFPLLALI FEKCELATCT PREPGVQGGD VCSSESFNED IAMFSKQIRS QKPYYTADPE  60
   61 VDSLMVQAIQ VLRFHLLELE KVHELCDNFC HRYISCLKGK MPIDLVIDER DTTKPPELGS 120
  121 ANGEGRSNAD STSHTDGA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [238-334]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STPDVRPPSS SLSYGGAMND DARSPGAGST PGPLSQQPPA LDTSDPDGRW CRREWSSPAD  60
   61 ARNADASRRL YSSVFLGSPD NFGTSASGDA SNASIGS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [335-472]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GEGTGEEDDD ASGKKNQKKR GIFPKVATNI LRAWLFQHLT HPYPSEDQKK QLAQDTGLTI  60
   61 LQVNNWFINA RRRIVQPMID QSNRAVYTPH PGPSGYGHDA MGYMMDSQAH MMHRPPGDPG 120
  121 FHQGYPHYPP AEYYGQHL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 13.09691
Match: 2dmnA
Description: No description for 2dmnA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle