YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|167419870, gi...
Organism:	Yersinia pestis biovar Orientalis str. MG05-1020
Length:	282 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|167419870, gi....

Description	E-value	Query Range	Subject Range
gi\|186699443, gi... - gi\|186896417\|ref\|YP_001873529.1\| CDP-diglyceride synthase [Yersinia pseudotuberculosis PB1/+], gi\|18... gi\|51597312, gi\|... - gi\|51597312\|ref\|YP_071503.1\| CDP-diglyceride synthase [Yersinia pseudotuberculosis IP 32953], gi\|515... Q667J5\|Q667J5_YERPS - Phosphatidate cytidylyltransferase precursor - Yersinia pseudotuberculosis	3.0E-56	[1..282]	[1..282]
sp\|P0ABG1\|CDSA_ECOLI - Phosphatidate cytidylyltransferase OS=Escherichia coli (strain K12) GN=cdsA PE=1 SV=2 gi\|218703429, gi... - gi\|218703429\|ref\|YP_002410948.1\| CDP-diglyceride synthase [Escherichia coli UMN026], gi\|218430526\|em... EG10139 - CDP-diglyceride synthase / CDP-diglyceride synthase, integral membrane protein with eight transmembr... gi\|157065320, gi... - gi\|157159640\|ref\|YP_001456958.1\| CDP-diglyceride synthase [Escherichia coli HS], gi\|157065320\|gb\|ABV... gi\|157158930, gi... - gi\|157158930\|ref\|YP_001461344.1\| CDP-diglyceride synthase [Escherichia coli E24377A], gi\|157080960\|g... gi\|189371124, gi... - gi\|189371124\|gb\|EDU89540.1\| phosphatidate cytidylyltransferase [Escherichia coli O157:H7 str. EC869]... gi\|189000432, gi... - gi\|189000432\|gb\|EDU69418.1\| phosphatidate cytidylyltransferase [Escherichia coli O157:H7 str. EC4076... gi\|168777012, gi... - gi\|187767700\|gb\|EDU31544.1\| phosphatidate cytidylyltransferase [Escherichia coli O157:H7 str. EC4196... gi\|189360733, gi... - gi\|189360733\|gb\|EDU79152.1\| phosphatidate cytidylyltransferase [Escherichia coli O157:H7 str. EC4486... gi\|189364912, gi... - gi\|189364912\|gb\|EDU83328.1\| phosphatidate cytidylyltransferase [Escherichia coli O157:H7 str. EC4501... gi\|238860124, gi... - gi\|238899573\|ref\|YP_002925369.1\| CDP-diglyceride synthase [Escherichia coli BW2952], gi\|238860124\|gb... gi\|168755788, gi... - gi\|189357094\|gb\|EDU75513.1\| phosphatidate cytidylyltransferase [Escherichia coli O157:H7 str. EC4401... gi\|188014560, gi... - gi\|188014560\|gb\|EDU52682.1\| phosphatidate cytidylyltransferase [Escherichia coli O157:H7 str. EC4113... gi\|162139814 - gi\|162139814\|ref\|NP_308204.2\| CDP-diglyceride synthase [Escherichia coli O157:H7 str. Sakai] CDSA_ECO57 - Phosphatidate cytidylyltransferase OS=Escherichia coli O157:H7 GN=cdsA PE=3 SV=2 gi\|161986588 - gi\|161986588\|ref\|YP_309214.2\| CDP-diglyceride synthase [Shigella sonnei Ss046] gi\|254791308, gi... - gi\|254791308\|ref\|YP_003076145.1\| CDP-diglyceride synthase [Escherichia coli O157:H7 str. TW14359], g... gi\|161486544 - gi\|161486544\|ref\|NP_835903.2\| CDP-diglyceride synthase [Shigella flexneri 2a str. 2457T] gi\|253972195, gi... - gi\|254160294\|ref\|YP_003043402.1\| CDP-diglyceride synthase [Escherichia coli B str. REL606], gi\|25397... gi\|161367650 - gi\|161367650\|ref\|NP_285869.2\| CDP-diglyceride synthase [Escherichia coli O157:H7 EDL933] gi\|254037594, gi... - gi\|254037594\|ref\|ZP_04871671.1\| phosphatidate cytidylyltransferase [Escherichia sp. 1_1_43], gi\|2268... gi\|24050378, gi\|... - ref\|NP_706120.1\| phosphatidate cytidylyltransferase [Shigella flexneri 2a str. 301], gb\|AAN41827.1\|... gi\|253325842, gi... - gi\|254287097\|ref\|YP_003052845.1\| CDP-diglyceride synthase [Escherichia coli BL21(DE3)], gi\|253976404... gi\|218350372, gi... - gi\|218693640\|ref\|YP_002401307.1\| CDP-diglyceride synthase [Escherichia coli 55989], gi\|218350372\|emb... gi\|218552756, gi... - gi\|218552756\|ref\|YP_002385669.1\| CDP-diglyceride synthase [Escherichia coli IAI1], gi\|218359524\|emb\|... gi\|217324800, gi... - gi\|217324800\|ref\|ZP_03440884.1\| phosphatidate cytidylyltransferase [Escherichia coli O157:H7 str. TW... gi\|209910624, gi... - gi\|209917365\|ref\|YP_002291449.1\| CDP-diglyceride synthase [Escherichia coli SE11], gi\|209910624\|dbj\|... gi\|85674368, gi\|... - gi\|89107055\|ref\|AP_000835.1\| CDP-diglyceride synthase [Escherichia coli str. K-12 substr. W3110], gi... gi\|209399460, gi... - gi\|209399460\|ref\|YP_002268783.1\| phosphatidate cytidylyltransferase [Escherichia coli O157:H7 str. E... EG10139 - CDP-diglyceride synthase / CDP-diglyceride synthase, integral membrane protein with eight transmembr... gi\|208818382, gi... - gi\|208818382\|ref\|ZP_03258702.1\| phosphatidate cytidylyltransferase [Escherichia coli O157:H7 str. EC... gi\|208733156, gi... - gi\|208811879\|ref\|ZP_03253208.1\| phosphatidate cytidylyltransferase [Escherichia coli O157:H7 str. EC... CDSA_SHIFL - Phosphatidate cytidylyltransferase OS=Shigella flexneri GN=cdsA PE=3 SV=2 gi\|208806666, gi... - gi\|208806666\|ref\|ZP_03249003.1\| phosphatidate cytidylyltransferase [Escherichia coli O157:H7 str. EC... gi\|195938143 - gi\|195938143\|ref\|ZP_03083525.1\| CDP-diglyceride synthase [Escherichia coli O157:H7 str. EC4024] gi\|194439143, gi... - gi\|194439143\|ref\|ZP_03071225.1\| phosphatidate cytidylyltransferase [Escherichia coli 101-1], gi\|1944... gi\|194428293, gi... - gi\|194428293\|ref\|ZP_03060835.1\| phosphatidate cytidylyltransferase [Escherichia coli B171], gi\|19441... gi\|193067707, gi... - gi\|193067707\|ref\|ZP_03048674.1\| phosphatidate cytidylyltransferase [Escherichia coli E110019], gi\|19... gi\|193063179, gi... - gi\|193063179\|ref\|ZP_03044270.1\| phosphatidate cytidylyltransferase [Escherichia coli E22], gi\|192931... gi\|188488146, gi... - gi\|188492947\|ref\|ZP_03000217.1\| phosphatidate cytidylyltransferase [Escherichia coli 53638], gi\|1884... gi\|187429746, gi... - gi\|187732754\|ref\|YP_001878977.1\| phosphatidate cytidylyltransferase [Shigella boydii CDC 3083-94], g... gi\|169887646, gi... - gi\|170079811\|ref\|YP_001729131.1\| CDP-diglyceride synthase [Escherichia coli str. K-12 substr. DH10B]...	7.0E-53	[1..282]	[1..282]
gi\|117672744, gi... - gi\|77630031\|ref\|ZP_00792617.1\| COG0575: CDP-diglyceride synthetase [Yersinia pseudotuberculosis IP 3... gi\|89105140 - gi\|89105140\|ref\|ZP_01177665.1\| COG0575: CDP-diglyceride synthetase [Yersinia pestis biovar Orientali... gi\|77633944 - gi\|77633944\|ref\|ZP_00796056.1\| COG0575: CDP-diglyceride synthetase [Yersinia pestis Angola]	8.0E-53	[10..282]	[1..273]
gi\|110640394, gi... - gi\|110640394\|ref\|YP_668122.1\| CDP-diglyceride synthase [Escherichia coli 536], gi\|110341986\|gb\|ABG68... gi\|191172767, gi... - gi\|191172767\|ref\|ZP_03034304.1\| phosphatidate cytidylyltransferase [Escherichia coli F11], gi\|190906... gi\|91209245, gi\|... - gi\|91209245\|ref\|YP_539231.1\| CDP-diglyceride synthase [Escherichia coli UTI89], gi\|91070819\|gb\|ABE05... gi\|218363885, gi... - gi\|218557116\|ref\|YP_002390029.1\| CDP-diglyceride synthase [Escherichia coli S88], gi\|218363885\|emb\|C... gi\|237704334, gi... - gi\|237704334\|ref\|ZP_04534815.1\| phosphatidate cytidylyltransferase [Escherichia sp. 3_2_53FAA], gi\|2...	1.0E-52	[1..282]	[1..282]
gi\|26246121, gi\|... - gi\|26246121\|ref\|NP_752160.1\| CDP-diglyceride synthase [Escherichia coli CFT073], gi\|26106518\|gb\|AAN7... gi\|218425614, gi... - gi\|218688050\|ref\|YP_002396262.1\| CDP-diglyceride synthase [Escherichia coli ED1a], gi\|218425614\|emb\|... gi\|170520306, gi... - gi\|170682588\|ref\|YP_001742303.1\| phosphatidate cytidylyltransferase [Escherichia coli SMS-3-5], gi\|1... gi\|227884912, gi... - gi\|227884912\|ref\|ZP_04002717.1\| phosphatidate cytidylyltransferase [Escherichia coli 83972], gi\|2278...	1.0E-52	[1..282]	[1..282]
gi\|197361430, gi... - gi\|197361430\|ref\|YP_002141066.1\| CDP-diglyceride synthase [Salmonella enterica subsp. enterica serov... gi\|56126752, gi\|... - gi\|56412495\|ref\|YP_149570.1\| CDP-diglyceride synthase [Salmonella enterica subsp. enterica serovar P...	2.0E-52	[1..282]	[1..282]
lcl\|NC_016856.1_... - [gene=cdsA] [protein=CDP-diglyceride synthase] [protein_id=YP_005235894.1] [location=260831..261688] gi\|16759212 - gi\|16759212\|ref\|NP_454829.1\| CDP-diglyceride synthase [Salmonella enterica subsp. enterica serovar T... gi\|16418727, gi\|... - gi\|16763612\|ref\|NP_459227.1\| CDP-diglyceride synthase [Salmonella typhimurium LT2], gi\|16418727\|gb\|A... gi\|29140762, gi\|... - gi\|29140762\|ref\|NP_804104.1\| CDP-diglyceride synthase [Salmonella enterica subsp. enterica serovar T... gi\|25288702, gi\|... - gi\|25288702\|pir\|\|AH0529 phosphatidate cytidylyltransferase [imported] - Salmonella enterica subsp. e... gi\|205336211, gi... - gi\|205336211\|gb\|EDZ22975.1\| phosphatidate cytidylyltransferase [Salmonella enterica subsp. enterica ... gi\|197292064, gi... - gi\|197292064\|gb\|EDY31414.1\| phosphatidate cytidylyltransferase [Salmonella enterica subsp. enterica ... gi\|205334954, gi... - gi\|205334954\|gb\|EDZ21718.1\| phosphatidate cytidylyltransferase [Salmonella enterica subsp. enterica ... gi\|205331391, gi... - gi\|205331391\|gb\|EDZ18155.1\| phosphatidate cytidylyltransferase [Salmonella enterica subsp. enterica ... gi\|194401897, gi... - gi\|194443234\|ref\|YP_002039462.1\| phosphatidate cytidylyltransferase [Salmonella enterica subsp. ente... gi\|205340479, gi... - gi\|205340479\|gb\|EDZ27243.1\| phosphatidate cytidylyltransferase [Salmonella enterica subsp. enterica ... gi\|168464214, gi... - gi\|195632976\|gb\|EDX51430.1\| phosphatidate cytidylyltransferase [Salmonella enterica subsp. enterica ... gi\|168263910, gi... - gi\|205347506\|gb\|EDZ34137.1\| phosphatidate cytidylyltransferase [Salmonella enterica subsp. enterica ... gi\|205322196, gi... - gi\|205322196\|gb\|EDZ10035.1\| phosphatidate cytidylyltransferase [Salmonella enterica subsp. enterica ... gi\|162139615 - gi\|162139615\|ref\|YP_215209.2\| CDP-diglyceride synthase [Salmonella enterica subsp. enterica serovar ... gi\|213609346 - gi\|213609346\|ref\|ZP_03369172.1\| CDP-diglyceride synthase [Salmonella enterica subsp. enterica serova... gi\|213425948 - gi\|213425948\|ref\|ZP_03358698.1\| CDP-diglyceride synthase [Salmonella enterica subsp. enterica serova... gi\|213163133 - gi\|213163133\|ref\|ZP_03348843.1\| CDP-diglyceride synthase [Salmonella enterica subsp. enterica serova... gi\|207855740, gi... - gi\|207855740\|ref\|YP_002242391.1\| CDP-diglyceride synthase [Salmonella enterica subsp. enterica serov... gi\|224582070, gi... - gi\|224582070\|ref\|YP_002635868.1\| phosphatidate cytidylyltransferase [Salmonella enterica subsp. ente... gi\|214000835 - gi\|214000835\|ref\|ZP_03411570.1\| CDP-diglyceride synthase [Salmonella enterica subsp. enterica serova... gi\|213646662 - gi\|213646662\|ref\|ZP_03376715.1\| CDP-diglyceride synthase [Salmonella enterica subsp. enterica serova... gi\|197249050, gi... - gi\|197249050\|ref\|YP_002145227.1\| phosphatidate cytidylyltransferase [Salmonella enterica subsp. ente... gi\|194710240, gi... - gi\|194734738\|ref\|YP_002113245.1\| phosphatidate cytidylyltransferase [Salmonella enterica subsp. ente... gi\|194457046, gi... - gi\|194470682\|ref\|ZP_03076666.1\| phosphatidate cytidylyltransferase [Salmonella enterica subsp. enter... gi\|194448982, gi... - gi\|194448982\|ref\|YP_002044212.1\| CDP-diglyceride synthase [Salmonella enterica subsp. enterica serov... gi\|205351559, gi... - gi\|205351559\|ref\|YP_002225360.1\| CDP-diglyceride synthase [Salmonella enterica subsp. enterica serov... gi\|204323390, gi... - gi\|204926725\|ref\|ZP_03217927.1\| phosphatidate cytidylyltransferase [Salmonella enterica subsp. enter... gi\|198242689, gi... - gi\|198242689\|ref\|YP_002214183.1\| phosphatidate cytidylyltransferase [Salmonella enterica subsp. ente... gi\|197263977, gi... - gi\|197263977\|ref\|ZP_03164051.1\| phosphatidate cytidylyltransferase [Salmonella enterica subsp. enter...	3.0E-52	[1..282]	[1..282]
gi\|85059915, gi\|... - gi\|85059915\|ref\|YP_455617.1\| CDP-diglyceride synthase [Sodalis glossinidius str. 'morsitans'], gi\|84...	4.0E-52	[1..282]	[1..282]
gi\|77972716, gi\|... - gi\|77972716\|ref\|ZP_00828275.1\| COG0575: CDP-diglyceride synthetase [Yersinia frederiksenii ATCC 3364...	2.0E-51	[10..282]	[1..273]
gi\|77977742 - gi\|77977742\|ref\|ZP_00833183.1\| COG0575: CDP-diglyceride synthetase [Yersinia intermedia ATCC 29909]	9.0E-51	[10..282]	[1..273]

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Predicted Domain #1

Region A:
Residues: [1-148]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKYRLITAL ILIPVVIGAL FLLPPVGFAI VTLVVCMLAA WEWGQLAGFA SRTQRIWLAI  60
   61 LCGFLLVAML LSLPEYQHSP HHLLVSTPLW LSMGWWVAAL MLVLTYPRSA VSWRNSRLLR 120
  121 IIFGILTIIP FFWGMFALRQ YGYEQNHN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [149-282]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TGAWWLLYVM LLVWGADSGA YMFGKLFGKH KLAPKVSPGK TWEGLIGGLL TSALISLLFG  60
   61 RYAPLDIVPE KLLICSVVAA LASVLGDLTE SMFKREAGIK DSGHLIPGHG GILDRIDSLT 120
  121 AAVPVFACLM LLVF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.804	N/A	N/A	a.2.2	Ribosomal protein L29 (L29p)

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits