YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|196022927, gi...
Organism:	Bacillus cereus 03BB108
Length:	264 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|196022927, gi....

Description	E-value	Query Range	Subject Range
gi\|206732814, gi... - gi\|206972240\|ref\|ZP_03233187.1\| cobalt transport protein [Bacillus cereus AH1134], gi\|206732814\|gb\|E... gi\|29893950, gi\|... - gi\|30018410\|ref\|NP_830041.1\| cobalt transport protein cbiQ [Bacillus cereus ATCC 14579], gi\|29893950...	8.0E-55	[1..264]	[1..264]
gi\|218544229, gi... - gi\|218895276\|ref\|YP_002443687.1\| cobalt transport protein [Bacillus cereus G9842], gi\|218544229\|gb\|A... gi\|75764617, gi\|... - gi\|75764617\|ref\|ZP_00744061.1\| Cobalt transport protein cbiQ [Bacillus thuringiensis serovar israele...	1.0E-54	[1..264]	[1..264]
gi\|47570253, gi\|... - gi\|47570253\|ref\|ZP_00240904.1\| cobalt transport family protein [Bacillus cereus G9241], gi\|47553077\|...	2.0E-54	[1..264]	[1..264]
gi\|206743750, gi... - gi\|206978037\|ref\|ZP_03238922.1\| cobalt transport protein [Bacillus cereus H3081.97], gi\|206743750\|gb... gi\|42779222, gi\|... - gi\|42779222\|ref\|NP_976469.1\| cobalt transport protein [Bacillus cereus ATCC 10987], gi\|42735137\|gb\|A... gi\|221237959, gi... - gi\|222093911\|ref\|YP_002527961.1\| ABC transporter, permease; possible cobalt transport protein [Bacil... gi\|217063698, gi... - gi\|217957716\|ref\|YP_002336260.1\| cobalt transport protein [Bacillus cereus AH187], gi\|217063698\|gb\|A...	2.0E-54	[1..264]	[1..264]
gi\|89208828, gi\|... - gi\|89208828\|ref\|ZP_01187312.1\| Cobalt transport protein [Bacillus weihenstephanensis KBAB4], gi\|8915...	6.0E-54	[1..264]	[1..264]
gi\|227555886, gi... - gi\|227555886\|ref\|ZP_03985933.1\| ABC superfamily ATP binding cassette transporter, membrane protein [... gi\|29342341, gi\|... - gi\|29374883\|ref\|NP_814036.1\| cobalt transport family protein [Enterococcus faecalis V583], gi\|293423...	7.0E-54	[1..264]	[2..265]
gi\|65317586 - gi\|65317586\|ref\|ZP_00390545.1\| COG0619: ABC-type cobalt transport system, permease component CbiQ an...	8.0E-54	[4..264]	[1..261]
gi\|68194964, gi\|... - gi\|69247199\|ref\|ZP_00604261.1\| Cobalt transport protein [Enterococcus faecium DO], gi\|68194964\|gb\|EA... gi\|48824751 - ref\|ZP_00286090.1\| COG0619: ABC-type cobalt transport system, permease component CbiQ and related tr...	3.0E-53	[1..263]	[2..264]
gi\|227896805, gi... - gi\|227896805\|ref\|ZP_04014610.1\| ABC superfamily ATP binding cassette transporter, membrane protein [... gi\|254556053, gi... - gi\|254556053\|ref\|YP_003062470.1\| ABC transporter, permease protein [Lactobacillus plantarum JDM1], g... gi\|28377869, gi\|... - gi\|28377869\|ref\|NP_784761.1\| ABC transporter, permease protein [Lactobacillus plantarum WCFS1], gi\|2...	1.0E-52	[1..264]	[2..266]
gi\|52346505, gi\|... - gi\|52784003\|ref\|YP_089832.1\| YbaF [Bacillus licheniformis ATCC 14580], gi\|52346505\|gb\|AAU39139.1\| Yb...	4.0E-52	[1..264]	[2..265]

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Predicted Domain #1

Region A:
Residues: [1-85]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQLIIGRYI PGNSLIHQLD PRTKLLIVFL YVFVVFLANN AISYGFLFLY ALIALFFAKV  60
   61 PIRYVLSGLK PILWIFLFTF FLHIF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [86-264]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TNKEGEVLFQ LGWFSIHEKG LEQGIYISIR FFVIILMTTL LTLTTTPIEI TDGLETLLKP  60
   61 LKRIKVPVHE IALMMSISLR FIPTLMDETS KIMKAQSSRG IDFAGGPIKD RMKAIISLLV 120
  121 PLFISAFKRA EDLAIAMEAR GYQSGEGRTK FRQLRWKTSD TVTIISLLCL ACILAWVRS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.909	N/A	N/A	a.24.1	Apolipoprotein

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits