YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|196022927, gi...
Organism:	Bacillus cereus 03BB108
Length:	264 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|196022927, gi....

Description	E-value	Query Range	Subject Range
gi\|206732814, gi... - gi\|206972240\|ref\|ZP_03233187.1\| cobalt transport protein [Bacillus cereus AH1134], gi\|206732814\|gb\|E... gi\|29893950, gi\|... - gi\|30018410\|ref\|NP_830041.1\| cobalt transport protein cbiQ [Bacillus cereus ATCC 14579], gi\|29893950...	8.0E-55	[1..264]	[1..264]
gi\|218544229, gi... - gi\|218895276\|ref\|YP_002443687.1\| cobalt transport protein [Bacillus cereus G9842], gi\|218544229\|gb\|A... gi\|75764617, gi\|... - gi\|75764617\|ref\|ZP_00744061.1\| Cobalt transport protein cbiQ [Bacillus thuringiensis serovar israele...	1.0E-54	[1..264]	[1..264]
gi\|47570253, gi\|... - gi\|47570253\|ref\|ZP_00240904.1\| cobalt transport family protein [Bacillus cereus G9241], gi\|47553077\|...	2.0E-54	[1..264]	[1..264]
gi\|206743750, gi... - gi\|206978037\|ref\|ZP_03238922.1\| cobalt transport protein [Bacillus cereus H3081.97], gi\|206743750\|gb... gi\|42779222, gi\|... - gi\|42779222\|ref\|NP_976469.1\| cobalt transport protein [Bacillus cereus ATCC 10987], gi\|42735137\|gb\|A... gi\|221237959, gi... - gi\|222093911\|ref\|YP_002527961.1\| ABC transporter, permease; possible cobalt transport protein [Bacil... gi\|217063698, gi... - gi\|217957716\|ref\|YP_002336260.1\| cobalt transport protein [Bacillus cereus AH187], gi\|217063698\|gb\|A...	2.0E-54	[1..264]	[1..264]
gi\|89208828, gi\|... - gi\|89208828\|ref\|ZP_01187312.1\| Cobalt transport protein [Bacillus weihenstephanensis KBAB4], gi\|8915...	6.0E-54	[1..264]	[1..264]
gi\|227555886, gi... - gi\|227555886\|ref\|ZP_03985933.1\| ABC superfamily ATP binding cassette transporter, membrane protein [... gi\|29342341, gi\|... - gi\|29374883\|ref\|NP_814036.1\| cobalt transport family protein [Enterococcus faecalis V583], gi\|293423...	7.0E-54	[1..264]	[2..265]
gi\|65317586 - gi\|65317586\|ref\|ZP_00390545.1\| COG0619: ABC-type cobalt transport system, permease component CbiQ an...	8.0E-54	[4..264]	[1..261]
gi\|68194964, gi\|... - gi\|69247199\|ref\|ZP_00604261.1\| Cobalt transport protein [Enterococcus faecium DO], gi\|68194964\|gb\|EA... gi\|48824751 - ref\|ZP_00286090.1\| COG0619: ABC-type cobalt transport system, permease component CbiQ and related tr...	3.0E-53	[1..263]	[2..264]
gi\|227896805, gi... - gi\|227896805\|ref\|ZP_04014610.1\| ABC superfamily ATP binding cassette transporter, membrane protein [... gi\|254556053, gi... - gi\|254556053\|ref\|YP_003062470.1\| ABC transporter, permease protein [Lactobacillus plantarum JDM1], g... gi\|28377869, gi\|... - gi\|28377869\|ref\|NP_784761.1\| ABC transporter, permease protein [Lactobacillus plantarum WCFS1], gi\|2...	1.0E-52	[1..264]	[2..266]
gi\|52346505, gi\|... - gi\|52784003\|ref\|YP_089832.1\| YbaF [Bacillus licheniformis ATCC 14580], gi\|52346505\|gb\|AAU39139.1\| Yb...	4.0E-52	[1..264]	[2..265]

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Predicted Domain #1

Region A:
Residues: [1-85]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQLIIGRYI PGNSLIHQLD PRTKLLIVFL YVFVVFLANN AISYGFLFLY ALIALFFAKV  60
   61 PIRYVLSGLK PILWIFLFTF FLHIF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [86-264]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TNKEGEVLFQ LGWFSIHEKG LEQGIYISIR FFVIILMTTL LTLTTTPIEI TDGLETLLKP  60
   61 LKRIKVPVHE IALMMSISLR FIPTLMDETS KIMKAQSSRG IDFAGGPIKD RMKAIISLLV 120
  121 PLFISAFKRA EDLAIAMEAR GYQSGEGRTK FRQLRWKTSD TVTIISLLCL ACILAWVRS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.909	N/A	N/A	a.24.1	Apolipoprotein
View	Download	0.731	N/A	N/A	a.19.1	Fertilization protein
View	Download	0.639	N/A	N/A	a.19.1	Fertilization protein
View	Download	0.570	N/A	N/A	a.7.5	Tubulin chaperone cofactor A
View	Download	0.554	N/A	N/A	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits