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View Structure Prediction Details

Protein: gi|52076947, gi|...
Organism: Oryza sativa Japonica Group
Length: 651 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|52076947, gi|....

Description E-value Query
Range
Subject
Range
gi|3152591, gi|7... - pir||T01062 hypothetical protein YUP8H12R.46 - Arabidopsis thaliana, gi|3152591|gb|AAC17072.1| Simi...
393.0 [0..10] [618..1]
gi|92874462 - gi|92874462|gb|ABE82727.1| Mitochodrial transcription termination factor-related [Medicago truncatul...
323.0 [0..40] [631..41]
gi|113632156, gi... - gi|115480659|ref|NP_001063923.1| Os09g0560100 [Oryza sativa (japonica cultivar-group)], gi|113632156...
307.0 [0..30] [572..30]

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Predicted Domain #1
Region A:
Residues: [1-229]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATATATAAL ALLSPPLPAS PTPPPPPPLR AILLKQPFLR PIRQRRRLSP RPLLRRRDPV  60
   61 AACAPTADAE TASTSRSYDA LEAERAVAEL LREHGASPAD AASIAARAPG YAAMLADGVR 120
  121 ELDELGLWES WSSGAGAGRE VEMAGLGFGR KVYYMGKAKS RRDRGVVPLL ESVGVRLSSA 180
  181 KLIAPYVSAA GLPVLIDRIK FLKEILFSSN VYETLISRNA KRMMMHLSI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [230-341]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PADESLQSTL SFFEKMEARY GGLNMLGHGD VSFPYLIESF PMLLLCSENN HLKPLIDFLQ  60
   61 YIGIPKPRIA SVLLSFPPII LSDVENDIKP RINAWEKVGI EQEYIGRMLL KY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [342-471]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PWILSTCVLE NYGQMLMFFQ RRKISSTVLG VAMRSWPHIL GCSTKRMNSI VELFDDLGIS  60
   61 KKMLVPVVTS SPQLLLRKPN EVMQIILFFK DMGLDKKTVA KILCRSPEIF ASSVENTLKK 120
  121 KINFLIDFGV 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [472-651]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PKHYLPRIIR KYPELLLLDI NRTMLPSSCE HVTDFNSSMY SNVYRINYLL DMGLSKKNVC  60
   61 SMIYRFSPLL GYSIELVMKP KLEFLLRTMK KPLKAVVEYP RYFSYSLEGR IKPRFCVLQS 120
  121 RKIDCSLTDM LAKNDELFAE EYLGVGRSLE TDIQSSEAAC FHMRKSTSAV LKHCEGLEYR 180
  181 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle