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View Structure Prediction Details

Protein: gi|15237439, gi|...
Organism: Arabidopsis thaliana
Length: 333 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15237439, gi|....

Description E-value Query
Range
Subject
Range
gi|21553503 - gi|21553503|gb|AAM62596.1| sucrose cleavage protein-like [Arabidopsis thaliana]
336.0 [0..1] [333..1]
gi|1086252, gi|7... - gi|707001|gb|AAB33256.1| Clostridium pasteurianum ferredoxin homolog [Solanum tuberosum], pir||S5137...
228.0 [0..25] [332..1]

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Predicted Domain #1
Region A:
Residues: [1-81]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADVENLNSV PASEDTEYGF KRPEMYSTNI ANSITSYARH VFVLYKTPEA WLSHVEEEGL  60
   61 PQRFATLLKD RKSDLLVQTK L

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [82-238]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NVCEGGGSDG DVLIFPDMIR YKGVKDTDVE GFFEDVLVNG KPWSSGIQEE ISGTFVFVCT  60
   61 HASRDKRCGV CGPVILERFK QEIGSRGLSD QITLKRCSHV GQHKYAGNLI IFCPDSAGKI 120
  121 TGNWYGYVTP DDVPELLDQH IAKGEIIQRI WRGQMGL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 13.154902
Match: 2fug2
Description: Crystal structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [239-333]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PGGEAEKVHE QKVIPNGHGV VKEESKGFTG GCCQGSNGVS CCQDETPKPE PIKKEVKKCT  60
   61 IWFQPLDKEE LYIGAAVVGA IATIAMAFTF FKRSG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.221849
Match: 2fug1
Description: Crystal structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle