YRC Public Data Repository - Protein Structure Prediction

Protein:	SOM1_KLULA
Organism:	Kluyveromyces lactis NRRL Y-1140
Length:	71 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SOM1_KLULA.

Description	E-value	Query Range	Subject Range
gi\|190405508 - gi\|190405508\|gb\|EDV08775.1\| protein SOM1, mitochondrial precursor [Saccharomyces cerevisiae RM11-1a] gi\|151944653 - gi\|151944653\|gb\|EDN62912.1\| mitochondrial inner membrane peptidase subunit [Saccharomyces cerevisiae... SOM1_YEAST - Protein SOM1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SOM1 PE=1 SV... SOM1 - Subunit of the mitochondrial inner membrane peptidase, which is required for maturation of mitochond...	113.0	[0..1]	[70..1]
gi\|44981456 - gi\|44981456\|gb\|AAS51241.1\| ACR014Cp [Ashbya gossypii ATCC 10895] gi\|44981456, gi\|... - gi\|45185701\|ref\|NP_983417.1\| ACR014Cp [Ashbya gossypii ATCC 10895], gi\|44981456\|gb\|AAS51241.1\| ACR01...	107.0	[0..1]	[70..1]
gi\|46432890, gi\|... - gi\|68489205\|ref\|XP_711577.1\| hypothetical protein CaO19.6359 [Candida albicans SC5314], gi\|68489066\|... gi\|14970729 - gi\|14970729\|emb\|CAC44450.1\| SOM1 protein [Candida albicans]	96.0	[0..1]	[70..1]
gi\|49654358, gi\|... - gi\|50420315\|ref\|XP_458691.1\| hypothetical protein DEHA0D05951g [Debaryomyces hansenii CBS767], gi\|49...	96.0	[0..1]	[70..1]

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Predicted Domain #1

Region A:
Residues: [1-71]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPPTKILGL DTQQRMLQRG ENCSLKSLVQ NECAFNGNDY VCTPFKRLFE QCMVKDGRVL  60
   61 NIEVTNLNTN R

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted functions:

Term	Confidence	Notes
binding	2.25407691717348	bayes_pls_golite062009
transcription regulator activity	1.42515866225969	bayes_pls_golite062009
nucleic acid binding	1.26366048863035	bayes_pls_golite062009
DNA binding	1.16420176302838	bayes_pls_golite062009
protein binding	0.602273936284589	bayes_pls_golite062009
transcription factor activity	0.602174091266498	bayes_pls_golite062009
hydrolase activity	0.511123422363152	bayes_pls_golite062009
signal transducer activity	0.0422473967103505	bayes_pls_golite062009
molecular transducer activity	0.0422473967103505	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: