YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229896238, gi...
Organism:	Yersinia pestis Pestoides A
Length:	232 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229896238, gi....

Description	E-value	Query Range	Subject Range
gi\|108812487, gi... - gi\|108812487\|ref\|YP_648254.1\| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pestis... gi\|108807169, gi... - gi\|108807169\|ref\|YP_651085.1\| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pestis... gi\|145598614, gi... - gi\|145598614\|ref\|YP_001162690.1\| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pes...	3.0E-66	[1..232]	[20..251]
gi\|166210809, gi... - gi\|166210809\|ref\|ZP_02236844.1\| flagella basal body P-ring formation protein FlgA [Yersinia pestis b... gi\|166010841, gi... - gi\|166010841\|ref\|ZP_02231739.1\| flagella basal body P-ring formation protein FlgA [Yersinia pestis b... gi\|166961938, gi... - gi\|167420243\|ref\|ZP_02311996.1\| flagella basal body P-ring formation protein FlgA [Yersinia pestis b... gi\|167049407, gi... - gi\|167401018\|ref\|ZP_02306521.1\| flagella basal body P-ring formation protein FlgA [Yersinia pestis b... gi\|162352268, gi... - gi\|77636012\|ref\|ZP_00798090.1\| COG1261: Flagellar basal body P-ring biosynthesis protein [Yersinia p... gi\|167469716 - gi\|167469716\|ref\|ZP_02334420.1\| flagella basal body P-ring formation protein FlgA [Yersinia pestis F... gi\|167425844, gi... - gi\|167425844\|ref\|ZP_02317597.1\| flagella basal body P-ring formation protein FlgA [Yersinia pestis b... gi\|22126394, gi\|... - gi\|22126394\|ref\|NP_669817.1\| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pestis ... gi\|45441413, gi\|... - gi\|45441413\|ref\|NP_992952.1\| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pestis ... gi\|89105476, gi\|... - gi\|89105476\|ref\|ZP_01177995.1\| COG1261: Flagellar basal body P-ring biosynthesis protein [Yersinia p... gi\|165926043, gi... - gi\|165926043\|ref\|ZP_02221875.1\| flagella basal body P-ring formation protein FlgA [Yersinia pestis b...	3.0E-66	[1..232]	[23..254]
gi\|117673903, gi... - gi\|77628870\|ref\|ZP_00791456.1\| COG1261: Flagellar basal body P-ring biosynthesis protein [Yersinia p...	5.0E-66	[1..232]	[23..254]
gi\|51589289, gi\|... - gi\|51596007\|ref\|YP_070198.1\| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pseudot... Q66BU6\|Q66BU6_YERPS - Flagella basal body P-ring formation protein FlgA precursor - Yersinia pseudotuberculosis	1.0E-65	[1..232]	[1..232]
gi\|77975730, gi\|... - gi\|77975730\|ref\|ZP_00831264.1\| COG1261: Flagellar basal body P-ring biosynthesis protein [Yersinia f...	3.0E-64	[1..232]	[1..226]
gi\|238799103, gi... - gi\|77960291\|ref\|ZP_00824170.1\| COG1261: Flagellar basal body P-ring biosynthesis protein [Yersinia m...	7.0E-62	[1..232]	[9..234]
gi\|77979940, gi\|... - gi\|77979940\|ref\|ZP_00835356.1\| COG1261: Flagellar basal body P-ring biosynthesis protein [Yersinia i...	2.0E-61	[1..232]	[1..226]
gi\|238785501, gi... - gi\|77957056\|ref\|ZP_00821123.1\| COG1261: Flagellar basal body P-ring biosynthesis protein [Yersinia b...	1.0E-60	[1..232]	[9..234]
FLGA_YEREN - Flagella basal body P-ring formation protein FlgA OS=Yersinia enterocolitica GN=flgA PE=3 SV=1	2.0E-59	[3..232]	[1..224]
gi\|25323453 - gi\|25323453\|pir\|\|A84969 hypothetical protein flgA [imported] - Buchnera sp. (strain APS) FLGA_BUCAI - Flagella basal body P-ring formation protein FlgA OS=Buchnera aphidicola subsp. Acyrthosiphon pisum ... FLGA_BUCAI - Flagella basal body P-ring formation protein flgA OS=Buchnera aphidicola subsp. Acyrthosiphon pisum ...	2.0E-58	[1..230]	[1..224]

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Predicted Domain #1

Region A:
Residues: [1-93]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVKRKNIII VALGLLLSHH ILAQQTLAAH QALETDLSVQ VNQFFQQQYS DKESQVKVVI  60
   61 KTPQNQWPQC DAPEITLPAN ARPWGNISLS VRC

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [94-232]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGLRRFIQTQ VQVSGRYAVA VRRLAAGEKI SAQDIQMKQG RLDTLPPGAL LDAHFAQGAV  60
   61 SQRQINAGQP LTRNMLRRLW LVKAGQDVPV LAQGDGFNVN SNGKAMNNGA AQETIRVRMP 120
  121 SGQIVSGTVA DDGTIRIML

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.7
Match:	1wvoA
Description:	Solution structure of RSGI RUH-029, an antifreeze protein like domain in human N-acetylneuraminic acid phosphate synthase gene.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits