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View Structure Prediction Details

Protein: gi|18411179, gi|...
Organism: Arabidopsis thaliana
Length: 251 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18411179, gi|....

Description E-value Query
Range
Subject
Range
gi|6996283, gi|1... - gi|6996283|emb|CAB75444.1| putative protein [Arabidopsis thaliana], pir||T49288 hypothetical protein...
202.0 [0..3] [251..1]
gi|92867363 - gi|92867363|gb|ABE77675.1| Ovarian tumour, otubain [Medicago truncatula]
176.0 [0..13] [248..1]
gi|113549913, gi... - gi|115455683|ref|NP_001051442.1| Os03g0777700 [Oryza sativa (japonica cultivar-group)], gi|113549913...
167.0 [0..44] [247..1]

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Predicted Domain #1
Region A:
Residues: [1-106]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMMGIPVELE VTTVENHNEM GESSGQAMIE QDDDNHNELG ENSGEQDEKV DLDSIPLAVA  60
   61 DMTEAQGDEP YVGQEFESEA AAHGFYNAYA TKVGFVIRVS KLSRSR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [107-183]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HDGSPIGRQL VCNKEGYRLP SKRDKVIRQR AETRVGCKAM ILIRKENSGK WVITKFVKEH  60
   61 NHSLMPGRVR RGCIYDQ

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.952
Match: 2aydA
Description: No description for 2aydA was found.

Predicted Domain #3
Region A:
Residues: [184-251]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YPNEHDKIQE LMQQLAAEKK RAATYKRHLE MLFEQIEQHN ESLSKRIQHI VDNVRNLEQR  60
   61 DHQQNHQV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle