YRC Public Data Repository - Protein Structure Prediction

Protein:	CCKN_CHICK
Organism:	Gallus gallus
Length:	130 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCKN_CHICK.

Description	E-value	Query Range	Subject Range
CCKN_STRCA - Cholecystokinin OS=Struthio camelus GN=CCK PE=1 SV=1	213.0	[0..1]	[130..1]
CCKN_TRASC - Cholecystokinin OS=Trachemys scripta PE=1 SV=2	209.0	[0..1]	[130..1]
CCKN_LITCT - Cholecystokinin OS=Lithobates catesbeiana GN=CCK PE=1 SV=2	188.0	[0..1]	[130..1]
CCK_PYTMO - Cholecystokinin-8 OS=Python molurus GN=CCK PE=2 SV=1	182.0	[0..1]	[130..1]
gi\|2246429 - gi\|2246429\|emb\|CAB10585.1\| preprocholecystokinin [Squalus acanthias]	177.0	[0..1]	[130..1]
gi\|38198207 - gi\|38198207\|dbj\|BAD01500.1\| cholecystokinin [Anguilla japonica]	163.0	[0..1]	[130..1]
CCKNB_XENLA - Cholecystokinin B OS=Xenopus laevis GN=cck-b PE=2 SV=1	163.0	[0..1]	[130..1]
gi\|55620065 - gi\|55620065\|ref\|XP_516386.1\| PREDICTED: cholecystokinin isoform 2 [Pan troglodytes]	163.0	[0..1]	[130..1]
gi\|30584119, gi\|... - gi\|60653099\|gb\|AAX29244.1\| cholecystokinin [synthetic construct], gi\|60653097\|gb\|AAX29243.1\| cholecy...	162.0	[0..1]	[130..1]

Back

Predicted Domain #1

Region A:
Residues: [1-130]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYGGICICVL LAALSVSSLG QQPAGSHDGS PVAAELQQSL TEPHRHSRAP SSAGPLKPAP  60
   61 RLDGSFEQRA TIGALLAKYL QQARKGSTGR FSVLGNRVQS IDPTHRINDR DYMGWMDFGR 120
  121 RSAEEYEYSS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	47.638272
Match:	PF00918.8
Description:	No description for PF00918.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits