YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|17429787
Organism:	Ralstonia solanacearum
Length:	198 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17429787.

Description	E-value	Query Range	Subject Range
gi\|94311917, gi\|... - gi\|94311917\|ref\|YP_585127.1\| hypothetical protein Rmet_2985 [Ralstonia metallidurans CH34], gi\|93355...	273.0	[0..1]	[198..1]
gi\|83746776, gi\|... - gi\|83746776\|ref\|ZP_00943824.1\| Hypothetical Protein RRSL_02692 [Ralstonia solanacearum UW551], gi\|83... gi\|206595727, gi... - gi\|207744322\|ref\|YP_002260714.1\| hypothetical protein RSIPO_02513 [Ralstonia solanacearum IPO1609], ...	272.0	[0..1]	[198..1]
gi\|91689173, gi\|... - gi\|91785219\|ref\|YP_560425.1\| hypothetical protein Bxe_A0560 [Burkholderia xenovorans LB400], gi\|9168...	264.0	[0..8]	[198..1]
gi\|170133970, gi... - gi\|170701109\|ref\|ZP_02892084.1\| conserved hypothetical protein [Burkholderia ambifaria IOP40-10], gi... gi\|74019730, gi\|... - gi\|74019730\|ref\|ZP_00690343.1\| conserved hypothetical protein [Burkholderia ambifaria AMMD], gi\|7260... gi\|171992136, gi... - gi\|172059619\|ref\|YP_001807271.1\| hypothetical protein BamMC406_0558 [Burkholderia ambifaria MC40-6],...	257.0	[0..8]	[198..1]
gi\|134137876, gi... - gi\|67546166\|ref\|ZP_00424082.1\| conserved hypothetical protein [Burkholderia vietnamiensis G4], gi\|67...	257.0	[0..8]	[198..1]
gi\|118648474, gi... - gi\|170731954\|ref\|YP_001763901.1\| hypothetical protein Bcenmc03_0601 [Burkholderia cenocepacia MC0-3]... gi\|84356734, gi\|... - gi\|84356734\|ref\|ZP_00981570.1\| hypothetical protein BcenP_01001161 [Burkholderia cenocepacia PC184],... gi\|206561730, gi... - gi\|206561730\|ref\|YP_002232495.1\| hypothetical protein BCAL3393 [Burkholderia cenocepacia J2315], gi\|... gi\|107021710, gi... - gi\|67660399\|ref\|ZP_00457747.1\| conserved hypothetical protein [Burkholderia cenocepacia AU 1054], gi... gi\|116646745, gi... - gi\|67666546\|ref\|ZP_00463792.1\| conserved hypothetical protein [Burkholderia cenocepacia HI2424], gi\|...	255.0	[0..8]	[198..1]
gi\|113527881, gi... - gi\|113869105\|ref\|YP_727594.1\| hypothetical protein H16_A3151 [Ralstonia eutropha H16], gi\|113527881\|...	253.0	[0..2]	[198..1]
gi\|84360788, gi\|... - gi\|84360788\|ref\|ZP_00985480.1\| hypothetical protein BdolA_01002754 [Burkholderia dolosa AUO158], gi\|...	250.0	[0..8]	[198..1]
gi\|78065191, gi\|... - gi\|78065191\|ref\|YP_367960.1\| hypothetical protein Bcep18194_A3715 [Burkholderia sp. 383], gi\|7796593...	249.0	[0..8]	[198..1]
gi\|72119943, gi\|... - gi\|73542530\|ref\|YP_297050.1\| hypothetical protein Reut_A2845 [Ralstonia eutropha JMP134], gi\|7211994...	246.0	[0..1]	[198..1]

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Predicted Domain #1

Region A:
Residues: [1-84]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTNMFGLDD SLTARDERVA RETWHKAQNL YDGVLGMQSL GPRVGGAAKL MPQDANLKDD  60
   61 GGREDAMNLF KTVRPNIVQS IRAF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [85-198]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RVADLAEAAT GLGQHFLYAN CAAATTKGEV LDVIAREFLF PKHFGKNFDA LADCLTDMIF  60
   61 KAGPQPGFVI VLEGLPCAPK FDKEARETLL DVFRDAAEFW GERKVQFRVF YSFA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.39794
Match:	1a19A
Description:	Barstar (barnase inhibitor)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits