YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|23098506, gi\|...
Organism:	Oceanobacillus iheyensis HTE831
Length:	256 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|23098506, gi|....

Description	E-value	Query Range	Subject Range
gi\|109451848, gi... - gi\|109451848\|emb\|CAK54795.1\| C22orf25 [synthetic construct], gi\|109451270\|emb\|CAK54496.1\| C22orf25 [... HGNC:25439\|Ensem... - 22 open reading frame 25 C22orf25 - chromosome 22 open reading frame 25	363.0	[0..1]	[255..1]
gi\|73995915 - gi\|73995915\|ref\|XP_850154.1\| PREDICTED: similar to Ser/Thr-rich protein T10 in DGCR region [Canis fa...	359.0	[0..1]	[255..1]
gi\|39982662, gi\|... - gi\|39995898\|ref\|NP_951849.1\| hypothetical protein GSU0792 [Geobacter sulfurreducens PCA], gi\|3998266...	356.0	[0..1]	[254..1]
gi\|74219739, gi\|... - gi\|74227275\|dbj\|BAE21736.1\| unnamed protein product [Mus musculus], gi\|74219739\|dbj\|BAE40462.1\| unna...	352.0	[0..1]	[255..1]
gi\|149019786, gi... - gi\|62658192\|ref\|XP_341011.2\| PREDICTED: similar to Ser/Thr-rich protein T10 in DGCR region [Rattus n...	347.0	[0..1]	[255..1]
TNG2_BOVIN - Transport and Golgi organization protein 2 homolog OS=Bos taurus GN=TANGO2 PE=2 SV=1	338.0	[0..1]	[255..1]
gi\|94310770, gi\|... - gi\|94310770\|ref\|YP_583980.1\| hypothetical protein Rmet_1832 [Ralstonia metallidurans CH34], gi\|93354...	332.0	[0..1]	[254..1]
gi\|39645613, gi\|... - gi\|39645613\|gb\|AAH63724.1\| MGC68627 protein [Xenopus laevis], gi\|148228476\|ref\|NP_001083694.1\| hypot...	331.0	[0..1]	[254..1]

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Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCLITFAIQK HSEYPFILIA NRDEFYDRPT AKASFWDDAP AILAGRDLKS KGTWLGITKQ  60
   61 GKIAAITNYR NPSLPETGTY SRGKIPVDFL NNEIDASHFL SRLEENKSLY AGYNALFGNY 120
  121 QNLYTYNNIY NSSEQL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [137-256]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VSGIHSLSND KLNTPWPKVV KARGLLQNHL ESNQDISNEA LFRILQNADK PNDQDLPDTG  60
   61 IGLQLERNLS SMFIDTGNYG TRASTIILID KNNDATFIER TYHQGNVIED KNYYFSIVSD 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits