YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|23098578, gi\|...
Organism:	Oceanobacillus iheyensis HTE831
Length:	290 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|23098578, gi|....

Description	E-value	Query Range	Subject Range
gi\|25389201 - pir\|\|F95180 cation efflux family protein [imported] - Streptococcus pneumoniae (strain TIGR4) gi\|111658460, gi... - gi\|15901395\|ref\|NP_345999.1\| cation efflux family protein [Streptococcus pneumoniae TIGR4], gi\|14973...	225.0	[0..1]	[288..1]
gi\|52784484, gi\|... - gi\|52784484\|ref\|YP_090313.1\| YeaB [Bacillus licheniformis ATCC 14580], gi\|52346986\|gb\|AAU39620.1\| Ye...	225.0	[0..1]	[290..1]
gi\|15903454, gi\|... - gi\|15903454\|ref\|NP_359004.1\| cation efflux family protein [Streptococcus pneumoniae R6], gi\|15459063... gi\|116077747, gi... - gi\|116517171\|ref\|YP_816844.1\| cation efflux family protein [Streptococcus pneumoniae D39], gi\|116077... gi\|25509049 - pir\|\|B98048 conserved hypothetical protein spr1411 [imported] - Streptococcus pneumoniae (strain R6)	225.0	[0..1]	[288..1]
gi\|19914617, gi\|... - gi\|20089689\|ref\|NP_615764.1\| cation efflux system protein [Methanosarcina acetivorans C2A], gi\|19914...	224.0	[0..8]	[287..79]
gi\|57641944, gi\|... - gi\|57641944\|ref\|YP_184422.1\| cobalt/zinc/cadmium cation efflux pump protein [Thermococcus kodakarens...	223.0	[0..3]	[285..2]
gi\|73669641, gi\|... - gi\|73669641\|ref\|YP_305656.1\| cation efflux system protein [Methanosarcina barkeri str. Fusaro], gi\|7...	222.0	[0..8]	[287..70]
gi\|84376661, gi\|... - gi\|84390858\|ref\|ZP_00991550.1\| putative CDF family transport protein [Vibrio splendidus 12B01], gi\|8...	220.0	[0..3]	[287..29]
gi\|238724681, gi... - gi\|77974413\|ref\|ZP_00829953.1\| COG0053: Predicted Co/Zn/Cd cation transporters [Yersinia frederiksen...	220.0	[0..2]	[288..13]
gi\|51976618, gi\|... - gi\|52143149\|ref\|YP_083680.1\| cation efflux protein [Bacillus cereus E33L], gi\|51976618\|gb\|AAU18168.1... gi\|118416958, gi... - gi\|118477733\|ref\|YP_894884.1\| cation efflux protein [Bacillus thuringiensis str. Al Hakam], gi\|11841...	220.0	[0..1]	[290..4]

Back

Predicted Domain #1

Region A:
Residues: [1-290]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRSDHLKQG EKGAWLSIIA YLILASSKLY IASIGSSDGL RADGLNNLTD IVTSVAVLIG  60
   61 LKIARKPPDD IHRYGHYRAE TIASLFAAFI MMFIGLQVIF EAGQKLINSS YTQPDMLTAW 120
  121 TAIFAAGIML CVYRFNLRLS RKIESGSLYA AAMDNKADAL VSIGVFIGII GAQFGLFWLD 180
  181 PLTAGVVGII ICKTAWDIFK DSTITLTDGF DDEKLTEIKE TIDKDPSVLR VDDIKGRIHG 240
  241 NQELLDITIH VDPNLTVAQG HEITDRIEEY LYDKHRISHA LIHIEPFEEQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.221849
Match:	2qfiA
Description:	No description for 2qfiA was found.

Predicted functions:

Term	Confidence	Notes
cation transmembrane transporter activity	6.3253503604398	bayes_pls_golite062009
ion transmembrane transporter activity	6.22189384650962	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	5.82185991246167	bayes_pls_golite062009
transporter activity	4.27173462293249	bayes_pls_golite062009
transmembrane transporter activity	4.18558383943492	bayes_pls_golite062009
substrate-specific transporter activity	3.94511592355578	bayes_pls_golite062009
efflux transmembrane transporter activity	1.98656970252979	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	1.95281540802467	bayes_pls_golite062009
metal ion transmembrane transporter activity	1.72936429569357	bayes_pls_golite062009
cation channel activity	1.1547412338864	bayes_pls_golite062009
ion channel activity	1.01093555209783	bayes_pls_golite062009
passive transmembrane transporter activity	0.963824080292546	bayes_pls_golite062009
channel activity	0.963824080292546	bayes_pls_golite062009
substrate-specific channel activity	0.948079854416241	bayes_pls_golite062009
binding	0.812276444952942	bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity	0.775439159437009	bayes_pls_golite062009
active transmembrane transporter activity	0.490905558612378	bayes_pls_golite062009
transition metal ion transmembrane transporter activity	0.255026640963499	bayes_pls_golite062009
protein binding	0.0921963177320718	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: