YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|22778184, gi\|...
Organism:	Oceanobacillus iheyensis HTE831
Length:	185 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|22778184, gi|....

Description	E-value	Query Range	Subject Range
gi\|68007762, gi\|... - gi\|68055627\|ref\|ZP_00539770.1\| Sigma 54 modulation protein/ribosomal protein S30EA [Exiguobacterium ...	223.0	[0..1]	[184..1]
gi\|186683153, gi... - gi\|23125050\|ref\|ZP_00107001.1\| COG1544: Ribosome-associated protein Y (PSrp-1) [Nostoc punctiforme P...	222.0	[0..1]	[184..1]
gi\|89084655, gi\|... - gi\|89100631\|ref\|ZP_01173489.1\| ribosomal subunit interface protein [Bacillus sp. NRRL B-14911], gi\|8...	222.0	[0..1]	[184..1]
gi\|17230676, gi\|... - gi\|17230676\|ref\|NP_487224.1\| light-repressed protein [Nostoc sp. PCC 7120], gi\|17132279\|dbj\|BAB74883... gi\|25535366 - pir\|\|AI2203 light-repressed protein [imported] - Nostoc sp. (strain PCC 7120)	222.0	[0..1]	[184..1]
gi\|45508700, gi\|... - gi\|75910086\|ref\|YP_324382.1\| SSU ribosomal protein S30P / sigma 54 modulation protein [Anabaena vari...	222.0	[0..1]	[184..1]
gi\|153168618, gi... - gi\|153168618\|ref\|ZP_01928441.1\| ribosomal subunit interface protein [Listeria monocytogenes FSL N1-0... gi\|254828086, gi... - gi\|254828086\|ref\|ZP_05232773.1\| hypothetical protein LmonocytogeFSL_06470 [Listeria monocytogenes FS... gi\|133731995, gi... - gi\|254937791\|ref\|ZP_05269488.1\| hypothetical protein LmonF6_11712 [Listeria monocytogenes F6900], gi... gi\|254932248, gi... - gi\|254932248\|ref\|ZP_05265607.1\| hypothetical protein LmonH_07449 [Listeria monocytogenes HPB2262], g... gi\|224499865 - gi\|224499865\|ref\|ZP_03668214.1\| ribosomal subunit interface protein [Listeria monocytogenes Finland ... gi\|224503249 - gi\|224503249\|ref\|ZP_03671556.1\| ribosomal subunit interface protein [Listeria monocytogenes FSL R2-5... gi\|47096104, gi\|... - gi\|47096104\|ref\|ZP_00233705.1\| ribosomal subunit interface protein [Listeria monocytogenes str. 1/2a... gi\|47017907, gi\|... - gi\|47093713\|ref\|ZP_00231465.1\| ribosomal subunit interface protein [Listeria monocytogenes str. 4b H... gi\|25516784, gi\|... - pir\|\|AG1388 conserved hypothetical proteins like to B. subtilis YvyD protein homolog lmo2511 [import... gi\|25517888, gi\|... - pir\|\|AI1763 conserved hypothetical protein like to B. subtilis YvyD protein homolog lin2655 [importe... gi\|46908683, gi\|... - gi\|46908683\|ref\|YP_015072.1\| ribosomal subunit interface protein [Listeria monocytogenes str. 4b F23... gi\|16804549 - gi\|16804549\|ref\|NP_466034.1\| hypothetical protein lmo2511 [Listeria monocytogenes EGD-e] gi\|16801716 - gi\|16801716\|ref\|NP_471984.1\| hypothetical protein lin2655 [Listeria innocua Clip11262] gi\|255521850 - gi\|255521850\|ref\|ZP_05389087.1\| hypothetical protein LmonocFSL_11602 [Listeria monocytogenes FSL J1-... gi\|255028457 - gi\|255028457\|ref\|ZP_05300408.1\| hypothetical protein LmonL_03211 [Listeria monocytogenes LO28] gi\|255025544 - gi\|255025544\|ref\|ZP_05297530.1\| hypothetical protein LmonocytFSL_02963 [Listeria monocytogenes FSL J... gi\|254879163 - gi\|254879163\|ref\|ZP_05251873.1\| hypothetical protein LmonFSL_08202 [Listeria monocytogenes FSL J2-07... gi\|254853960 - gi\|254853960\|ref\|ZP_05243308.1\| hypothetical protein LmonoFSL_11909 [Listeria monocytogenes FSL R2-5... gi\|254825367 - gi\|254825367\|ref\|ZP_05230368.1\| hypothetical protein LmonFS_09392 [Listeria monocytogenes FSL J1-194... gi\|226225059, gi... - gi\|226225059\|ref\|YP_002759166.1\| Conserved hypothetical proteins like to B. subtilis YvyD protein [L... gi\|254900351, gi... - gi\|254900351\|ref\|ZP_05260275.1\| hypothetical protein LmonJ_11072 [Listeria monocytogenes J0161], gi\|... gi\|127633234, gi... - gi\|254831066\|ref\|ZP_05235721.1\| hypothetical protein Lmon1_06888 [Listeria monocytogenes 10403S], gi... gi\|254913410, gi... - gi\|254913410\|ref\|ZP_05263422.1\| hypothetical protein LmonJ2_11462 [Listeria monocytogenes J2818], gi...	221.0	[0..2]	[182..3]
gi\|228771268, gi... - gi\|228988412\|ref\|ZP_04148503.1\| Ribosome-associated factor Y [Bacillus thuringiensis serovar tochigi... gi\|217962670, gi... - gi\|217962670\|ref\|YP_002341244.1\| ribosomal subunit interface protein [Bacillus cereus AH187], gi\|217... gi\|229158753, gi... - gi\|229158753\|ref\|ZP_04286811.1\| Ribosome-associated factor Y [Bacillus cereus ATCC 4342], gi\|2286247... gi\|222098642, gi... - gi\|222098642\|ref\|YP_002532700.1\| ribosomal subunit interface protein [Bacillus cereus Q1], gi\|221242... gi\|228641531, gi... - gi\|229141916\|ref\|ZP_04270442.1\| Ribosome-associated factor Y [Bacillus cereus BDRD-ST26], gi\|2286415... gi\|47569295, gi\|... - gi\|47569295\|ref\|ZP_00239980.1\| ribosomal subunit interface protein [Bacillus cereus G9241], gi\|47568...	220.0	[0..1]	[182..1]
gi\|196039551, gi... - gi\|196039551\|ref\|ZP_03106856.1\| ribosomal subunit interface protein [Bacillus cereus NVH0597-99], gi... gi\|254755618 - gi\|254755618\|ref\|ZP_05207651.1\| ribosomal subunit interface protein [Bacillus anthracis str. Vollum] gi\|196045660, gi... - gi\|196045660\|ref\|ZP_03112890.1\| ribosomal subunit interface protein [Bacillus cereus 03BB108], gi\|19... gi\|254744320 - gi\|254744320\|ref\|ZP_05202000.1\| ribosomal subunit interface protein [Bacillus anthracis str. Kruger ... gi\|49188025, gi\|... - gi\|49188025\|ref\|YP_031278.1\| ribosomal subunit interface protein [Bacillus anthracis str. Sterne], g... gi\|218538065, gi... - gi\|218906364\|ref\|YP_002454198.1\| ribosomal subunit interface protein [Bacillus cereus AH820], gi\|218... gi\|254735592 - gi\|254735592\|ref\|ZP_05193299.1\| ribosomal subunit interface protein [Bacillus anthracis str. Western... gi\|52140376, gi\|... - gi\|52140376\|ref\|YP_086454.1\| ribosomal subunit interface protein [Bacillus cereus E33L], gi\|51973845... gi\|254686387 - gi\|254686387\|ref\|ZP_05150246.1\| ribosomal subunit interface protein [Bacillus anthracis str. CNEVA-9... gi\|30259891, gi\|... - gi\|30265214\|ref\|NP_847591.1\| ribosomal subunit interface protein [Bacillus anthracis str. Ames], gi\|... gi\|229600659, gi... - gi\|229600659\|ref\|YP_002869408.1\| ribosomal subunit interface protein [Bacillus anthracis str. A0248]... gi\|47530736, gi\|... - gi\|47530736\|ref\|YP_022085.1\| ribosomal subunit interface protein [Bacillus anthracis str. 'Ames Ance... gi\|229187399, gi... - gi\|229187399\|ref\|ZP_04314542.1\| Ribosome-associated factor Y [Bacillus cereus BGSC 6E1], gi\|22859610... gi\|228607592, gi... - gi\|229175859\|ref\|ZP_04303357.1\| Ribosome-associated factor Y [Bacillus cereus MM3], gi\|228607592\|gb\|... gi\|21397652, gi\|... - gi\|65317161\|ref\|ZP_00390120.1\| COG1544: Ribosome-associated protein Y (PSrp-1) [Bacillus anthracis s... gi\|229124695, gi... - gi\|229124695\|ref\|ZP_04253876.1\| Ribosome-associated factor Y [Bacillus cereus 95/8201], gi\|228658790... gi\|164714285, gi... - gi\|165869962\|ref\|ZP_02214619.1\| ribosomal subunit interface protein [Bacillus anthracis str. A0488],... gi\|229094283, gi... - gi\|229094283\|ref\|ZP_04225359.1\| Ribosome-associated factor Y [Bacillus cereus Rock3-42], gi\|22868913... gi\|167635298, gi... - gi\|167635298\|ref\|ZP_02393613.1\| ribosomal subunit interface protein [Bacillus anthracis str. A0442],... gi\|228981891, gi... - gi\|228981891\|ref\|ZP_04142186.1\| Ribosome-associated factor Y [Bacillus thuringiensis Bt407], gi\|2287... gi\|167640491, gi... - gi\|167640491\|ref\|ZP_02398754.1\| ribosomal subunit interface protein [Bacillus anthracis str. A0193],... gi\|228975253, gi... - gi\|228975253\|ref\|ZP_04135811.1\| Ribosome-associated factor Y [Bacillus thuringiensis serovar thuring... gi\|170687990, gi... - gi\|170687990\|ref\|ZP_02879203.1\| ribosomal subunit interface protein [Bacillus anthracis str. A0465],... gi\|228948907, gi... - gi\|228948907\|ref\|ZP_04111180.1\| Ribosome-associated factor Y [Bacillus thuringiensis serovar monterr... gi\|170707806, gi... - gi\|170707806\|ref\|ZP_02898257.1\| ribosomal subunit interface protein [Bacillus anthracis str. A0389],... gi\|228942324, gi... - gi\|228942324\|ref\|ZP_04104863.1\| Ribosome-associated factor Y [Bacillus thuringiensis serovar berline... gi\|172081770, gi... - gi\|177652995\|ref\|ZP_02935322.1\| ribosomal subunit interface protein [Bacillus anthracis str. A0174],... gi\|228917792, gi... - gi\|228917792\|ref\|ZP_04081331.1\| Ribosome-associated factor Y [Bacillus thuringiensis serovar pulsien... gi\|190567823, gi... - gi\|190567823\|ref\|ZP_03020735.1\| ribosomal subunit interface protein [Bacillus anthracis Tsiankovskii... gi\|227004908, gi... - gi\|227817948\|ref\|YP_002817957.1\| ribosomal subunit interface protein [Bacillus anthracis str. CDC 68... gi\|195994277, gi... - gi\|196032848\|ref\|ZP_03100261.1\| ribosomal subunit interface protein [Bacillus cereus W], gi\|19599427... gi\|225790392, gi... - gi\|225867152\|ref\|YP_002752530.1\| ribosomal subunit interface protein [Bacillus cereus 03BB102], gi\|2... gi\|118419452, gi... - gi\|118480227\|ref\|YP_897378.1\| sigma 54 modulation protein / SSU ribosomal protein S30P [Bacillus thu... gi\|254757073 - gi\|254757073\|ref\|ZP_05209101.1\| ribosomal subunit interface protein [Bacillus anthracis str. Austral...	219.0	[0..1]	[182..1]
YVYD_BACSU - Putative sigma-54 modulation protein OS=Bacillus subtilis (strain 168) GN=yvyD PE=1 SV=2 gi\|221325008 - gi\|221325008\|ref\|ZP_03606302.1\| hypothetical protein BsubsS_19136 [Bacillus subtilis subsp. subtilis... gi\|221320723 - gi\|221320723\|ref\|ZP_03602017.1\| hypothetical protein BsubsJ_18980 [Bacillus subtilis subsp. subtilis... gi\|221315808 - gi\|221315808\|ref\|ZP_03597613.1\| hypothetical protein BsubsN3_19017 [Bacillus subtilis subsp. subtili... YVYD_BACSU - Uncharacterized protein yvyD OS=Bacillus subtilis GN=yvyD PE=3 SV=2	217.0	[0..1]	[183..1]
gi\|89201187, gi\|... - gi\|89201187\|ref\|ZP_01179933.1\| Sigma 54 modulation protein/ribosomal protein S30EA [Bacillus cereus ...	217.0	[0..1]	[184..1]

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Predicted Domain #1

Region A:
Residues: [1-185]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFNIRGENI EVTGAIKEYV EKKISKLERY FDSAPNTDVH VNLSVYNDEQ RIEVTIPMTN  60
   61 LLLRGEVQHI DLYAAVDLVV DKLERQIRKH KTKINRKFRQ NGSPKHAFAE MEKEARLAED 120
  121 EEDENQLEIV RTKRFNLKPM DSEEAILQMD MLGHEFFVFT NDDSGETNVV YRRRDGKYGL 180
  181 IEPHV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.522879
Match:	1n3gA
Description:	Ribosome binding protein Y (YfiA homologue)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.47304811799096	bayes_pls_golite062009
protein binding	0.411183424287687	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: