YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24348842, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	248 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24348842, gi|....

Description	E-value	Query Range	Subject Range
gi\|51974042, gi\|... - gi\|52140573\|ref\|YP_086257.1\| 4-nitrophenylphosphatase (p-nitrophenylphosphate phosphohydrolase) [Bac...	172.0	[0..2]	[247..3]
gi\|217962424, gi... - gi\|217962424\|ref\|YP_002340996.1\| phosphatase,haloacid dehalogenase family [Bacillus cereus AH187], g... gi\|218906151, gi... - gi\|218906151\|ref\|YP_002453985.1\| phosphatase,haloacid dehalogenase family [Bacillus cereus AH820], g... gi\|196040536, gi... - gi\|196040536\|ref\|ZP_03107836.1\| phosphatase,haloacid dehalogenase family [Bacillus cereus NVH0597-99... gi\|206970312, gi... - gi\|206970312\|ref\|ZP_03231265.1\| phosphatase,haloacid dehalogenase family [Bacillus cereus AH1134], g... gi\|228829663, gi... - gi\|228929983\|ref\|ZP_04092994.1\| hypothetical protein bthur0010_46650 [Bacillus thuringiensis serovar... gi\|228835822, gi... - gi\|228923693\|ref\|ZP_04086971.1\| hypothetical protein bthur0011_46680 [Bacillus thuringiensis serovar... gi\|228842065, gi... - gi\|228917585\|ref\|ZP_04081129.1\| hypothetical protein bthur0012_47910 [Bacillus thuringiensis serovar... gi\|228856151, gi... - gi\|228903466\|ref\|ZP_04067591.1\| hypothetical protein bthur0014_46270 [Bacillus thuringiensis IBL 422... gi\|228710427, gi... - gi\|229072451\|ref\|ZP_04205653.1\| hypothetical protein bcere0025_46120 [Bacillus cereus F65185], gi\|22... gi\|229049653, gi... - gi\|229049653\|ref\|ZP_04194210.1\| hypothetical protein bcere0027_46110 [Bacillus cereus AH676], gi\|228... gi\|221242468, gi... - gi\|222098409\|ref\|YP_002532467.1\| 4-nitrophenylphosphatase (p-nitrophenylphosphate phosphohydrolase) ... gi\|228771498, gi... - gi\|228988201\|ref\|ZP_04148298.1\| hypothetical protein bthur0001_48590 [Bacillus thuringiensis serovar... gi\|228823372, gi... - gi\|228936256\|ref\|ZP_04099055.1\| hypothetical protein bthur0009_46940 [Bacillus thuringiensis serovar... gi\|229141677, gi... - gi\|229141677\|ref\|ZP_04270207.1\| hypothetical protein bcere0013_47670 [Bacillus cereus BDRD-ST26], gi... gi\|229130219, gi... - gi\|229130219\|ref\|ZP_04259178.1\| hypothetical protein bcere0015_46550 [Bacillus cereus BDRD-Cer4], gi... gi\|228658835, gi... - gi\|229124495\|ref\|ZP_04253680.1\| hypothetical protein bcere0016_47790 [Bacillus cereus 95/8201], gi\|2... gi\|229112405, gi... - gi\|229112405\|ref\|ZP_04241943.1\| hypothetical protein bcere0018_46450 [Bacillus cereus Rock1-15], gi\|... gi\|228602153, gi... - gi\|229181260\|ref\|ZP_04308590.1\| hypothetical protein bcere0005_46020 [Bacillus cereus 172560W], gi\|2... gi\|229158555, gi... - gi\|229158555\|ref\|ZP_04286614.1\| hypothetical protein bcere0010_47280 [Bacillus cereus ATCC 4342], gi... gi\|228630251, gi... - gi\|229153152\|ref\|ZP_04281331.1\| hypothetical protein bcere0011_46820 [Bacillus cereus m1550], gi\|228... gi\|229147508, gi... - gi\|229147508\|ref\|ZP_04275855.1\| hypothetical protein bcere0012_46370 [Bacillus cereus BDRD-ST24], gi... gi\|229199107, gi... - gi\|229199107\|ref\|ZP_04325790.1\| hypothetical protein bcere0001_46200 [Bacillus cereus m1293], gi\|228... gi\|228590218, gi... - gi\|229193241\|ref\|ZP_04320192.1\| hypothetical protein bcere0002_48880 [Bacillus cereus ATCC 10876], g... gi\|49480351, gi\|... - gi\|49480351\|ref\|YP_038978.1\| 4-nitrophenylphosphatase (p-nitrophenylphosphate phosphohydrolase) [Bac... gi\|42784142, gi\|... - gi\|42784142\|ref\|NP_981389.1\| phosphatase [Bacillus cereus ATCC 10987], gi\|42740073\|gb\|AAS43997.1\| ph... gi\|30022999, gi\|... - gi\|30022999\|ref\|NP_834630.1\| 4-nitrophenylphosphatase [Bacillus cereus ATCC 14579], gi\|29898559\|gb\|A...	172.0	[0..2]	[247..3]
gi\|47566995, gi\|... - gi\|47566995\|ref\|ZP_00237712.1\| HAD-superfamily subfamily IIA hydrolase, TIGR01457 [Bacillus cereus G...	171.0	[0..2]	[247..3]
gi\|254753099 - gi\|254753099\|ref\|ZP_05205135.1\| phosphatase,haloacid dehalogenase family protein [Bacillus anthracis... gi\|254740639 - gi\|254740639\|ref\|ZP_05198330.1\| phosphatase,haloacid dehalogenase family protein [Bacillus anthracis... gi\|254735372 - gi\|254735372\|ref\|ZP_05193080.1\| phosphatase,haloacid dehalogenase family protein [Bacillus anthracis... gi\|254725303 - gi\|254725303\|ref\|ZP_05187086.1\| phosphatase,haloacid dehalogenase family protein [Bacillus anthracis... gi\|254761441 - gi\|254761441\|ref\|ZP_05213462.1\| phosphatase,haloacid dehalogenase family protein [Bacillus anthracis... gi\|190561658, gi... - gi\|190567154\|ref\|ZP_03020069.1\| phosphatase,haloacid dehalogenase family [Bacillus anthracis Tsianko... gi\|170706929, gi... - gi\|170706929\|ref\|ZP_02897386.1\| phosphatase,haloacid dehalogenase family [Bacillus anthracis str. A0... gi\|172082263, gi... - gi\|177652257\|ref\|ZP_02934760.1\| phosphatase,haloacid dehalogenase family [Bacillus anthracis str. A0... gi\|167511981, gi... - gi\|167639900\|ref\|ZP_02398168.1\| phosphatase,haloacid dehalogenase family [Bacillus anthracis str. A0... gi\|170685633, gi... - gi\|170685633\|ref\|ZP_02876856.1\| phosphatase,haloacid dehalogenase family [Bacillus anthracis str. A0... gi\|165870829, gi... - gi\|165870829\|ref\|ZP_02215481.1\| phosphatase,haloacid dehalogenase family [Bacillus anthracis str. A0... gi\|49187817, gi\|... - gi\|49187817\|ref\|YP_031070.1\| phosphatase [Bacillus anthracis str. Sterne], gi\|49181744\|gb\|AAT57120.1... gi\|167529604, gi... - gi\|167634854\|ref\|ZP_02393172.1\| phosphatase,haloacid dehalogenase family [Bacillus anthracis str. A0... gi\|47505647, gi\|... - gi\|47530499\|ref\|YP_021848.1\| phosphatase [Bacillus anthracis str. 'Ames Ancestor'], gi\|47505647\|gb\|A... gi\|30264998, gi\|... - gi\|30264998\|ref\|NP_847375.1\| phosphatase [Bacillus anthracis str. Ames], gi\|30259675\|gb\|AAP28861.1\| ... gi\|254687291 - gi\|254687291\|ref\|ZP_05151148.1\| phosphatase,haloacid dehalogenase family protein [Bacillus anthracis... gi\|229265250, gi... - gi\|229600842\|ref\|YP_002869201.1\| phosphatase,haloacid dehalogenase family [Bacillus anthracis str. A... gi\|227817729, gi... - gi\|227817729\|ref\|YP_002817738.1\| phosphatase,haloacid dehalogenase family [Bacillus anthracis str. C...	169.0	[0..2]	[247..3]
gi\|52081724, gi\|... - gi\|52787110\|ref\|YP_092939.1\| YutF [Bacillus licheniformis ATCC 14580], gi\|52349612\|gb\|AAU42246.1\| Yu...	169.0	[0..2]	[247..5]
gi\|25303453, gi\|... - pir\|\|AG1744 conserved hypothetical protein and to B. subtilis YutF protein homolog lin2500 [imported... gi\|16801562 - gi\|16801562\|ref\|NP_471830.1\| hypothetical protein lin2500 [Listeria innocua Clip11262]	168.0	[0..2]	[245..5]
gi\|46881847, gi\|... - gi\|46908575\|ref\|YP_014964.1\| HAD family hydrolase [Listeria monocytogenes str. 4b F2365], gi\|4688184... gi\|47018639, gi\|... - gi\|47092985\|ref\|ZP_00230765.1\| HAD-superfamily hydrolase, subfamily IIA [Listeria monocytogenes str.... gi\|254825475 - gi\|254825475\|ref\|ZP_05230476.1\| HAD family hydrolase [Listeria monocytogenes FSL J1-194] gi\|133726253, gi... - gi\|153168482\|ref\|ZP_01928325.1\| hypothetical protein LMHG_01347 [Listeria monocytogenes FSL N1-017],... gi\|254879436 - gi\|254879436\|ref\|ZP_05252146.1\| HAD family hydrolase [Listeria monocytogenes FSL J2-071] gi\|153203974, gi... - gi\|254933172\|ref\|ZP_05266531.1\| HAD family hydrolase [Listeria monocytogenes HPB2262], gi\|153203974\|... gi\|254853593 - gi\|254853593\|ref\|ZP_05242941.1\| HAD family hydrolase [Listeria monocytogenes FSL R2-503] gi\|255522419 - gi\|255522419\|ref\|ZP_05389656.1\| HAD family hydrolase [Listeria monocytogenes FSL J1-175]	167.0	[0..2]	[245..5]
gi\|89151819, gi\|... - gi\|89200207\|ref\|ZP_01178962.1\| HAD-superfamily subfamily IIA hydrolase, hypothetical 1:HAD-superfami...	167.0	[0..2]	[247..3]
gi\|77979054 - gi\|77979054\|ref\|ZP_00834476.1\| COG0647: Predicted sugar phosphatases of the HAD superfamily [Yersini...	167.0	[0..1]	[245..3]
gi\|163864871, gi... - gi\|89206066\|ref\|ZP_01184629.1\| HAD-superfamily subfamily IIA hydrolase, hypothetical 1:HAD-superfami...	167.0	[0..2]	[247..3]

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Predicted Domain #1

Region A:
Residues: [1-248]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNIICDIDG VLLHDNKLIP GSDKFIQRIL EQGNPLVILT NYPVQTGKDL QNRLSAAGID  60
   61 VPEECFYTSA MATADFLKHQ EGSKAFVIGE GALTHELYKA GFTITDINPD FVIVGETRSY 120
  121 NWDMIHKAAG FVARGARFIA TNPDTHGPAY SPACGALCSP IERITGKKPF YVGKPSSWII 180
  181 RSALNHIDGH SENTVIIGDN MRTDILAGFQ AGLETILVTS GVSKLEDIDK EPFRPNHVFA 240
  241 CAGDIDVV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.39794
Match:	2c4nA
Description:	NagD from E.coli K-12 strain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.55296860681783	bayes_pls_golite062009
hydrolase activity	0.908568440323554	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: