YRC Public Data Repository - Protein Structure Prediction

Protein:	MURD_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	439 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MURD_SHEON.

Description	E-value	Query Range	Subject Range
gi\|68518794, gi\|... - gi\|68543490\|ref\|ZP_00583193.1\| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Shewanella baltica OS...	336.0	[0..1]	[439..1]
MURD_SHEVI - UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Shewanella violacea GN=murD PE=3 SV=1 MURD_SHEVD - UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Shewanella violacea (strain JCM 10179 / CIP 10629...	335.0	[0..1]	[436..1]
gi\|146291592, gi... - gi\|77814548\|ref\|ZP_00813806.1\| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Shewanella putrefacie...	334.0	[0..1]	[439..1]
gi\|78359691, gi\|... - gi\|78368234\|ref\|ZP_00838475.1\| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Shewanella sp. PV-4],...	334.0	[0..1]	[439..1]
gi\|82406222, gi\|... - gi\|82495630\|ref\|ZP_00881204.1\| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Shewanella sp. MR-4],...	333.0	[0..1]	[439..1]
gi\|91713722, gi\|... - gi\|91791720\|ref\|YP_561371.1\| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella denitrifica...	333.0	[0..1]	[436..1]
gi\|117614509, gi... - gi\|78686898\|ref\|ZP_00851659.1\| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Shewanella sp. ANA-3]...	333.0	[0..1]	[439..1]
gi\|82742146, gi\|... - gi\|82742146\|ref\|ZP_00904848.1\| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Shewanella sp. W3-18-...	333.0	[0..1]	[439..1]
gi\|69165040, gi\|... - gi\|69951276\|ref\|ZP_00639017.1\| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Shewanella frigidimar...	331.0	[0..1]	[437..1]
gi\|113887336, gi... - gi\|78691045\|ref\|ZP_00855677.1\| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Shewanella sp. MR-7],...	331.0	[0..1]	[439..1]

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Predicted Domain #1

Region A:
Residues: [1-439]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSQYSHIVL GLGATGLSVV RYLCGKGITP LVMDSRRQPP GAETLASSFP EVKLIAGGFD  60
   61 CRYLVQATQI IISPGIAMNT PEVRAALDMG IEVIGDVELF AREIADRKPC VIGITGSNGK 120
  121 TTVTTLVGEM LREAGIAVAV GGNIGIPALD LLKENADIFV LELSSFQLET THSLNCVAST 180
  181 CLNVTEDHMD RYSDMDAYRK AKLRLYHQSR SIIFNRDDAL TIPTEPMNQN SFGLAPPEGD 240
  241 EWGICDSKIY HGHSEIMPIT EVSLIGSHNH ANLLAAMALV YAVGVDKQVM ANVARTFTGL 300
  301 SHRCEVVGVK GGVTYVNDSK ATNVGATVAA LDGLSDHLGD IILIAGGDGK GADFSPLEEP 360
  361 LTKVTHLITL GRDGNKIAAL KEGAIKVDSM AAAVAKAAQL ATSGDIVLLS PACASLDMYS 420
  421 NFMARGDDFR SQVEQLDGE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	77.522879
Match:	2jffA
Description:	No description for 2jffA was found.

Predicted functions:

Term	Confidence	Notes
acid-amino acid ligase activity	4.86493054281191	bayes_pls_golite062009
catalytic activity	3.03081854683329	bayes_pls_golite062009
UDP-N-acetylmuramate-L-alanine ligase activity	2.62956763198067	bayes_pls_golite062009
UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase activity	2.38541436302257	bayes_pls_golite062009
ligase activity	2.2556848409907	bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds	2.19206014001612	bayes_pls_golite062009
UDP-N-acetylmuramoylalanine-D-glutamate ligase activity	1.471039191151	bayes_pls_golite062009
UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity	1.15437935952018	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: