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Protein Overview: MURD_SHEON

General Information:
Name(s) found: MURD_SHEON [Swiss-Prot]
Description(s) found:
Found 5 descriptions.
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  • UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Shewanella oneidensis (strain MR-1) GN=murD PE=3 SV=1 [Swiss-Prot]
    • Organism: Shewanella oneidensis MR-1
    Length: 439 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: peptidoglycan biosynthetic process [ISSLink to PubMed article]
    Molecular Function: UDP-N-acetylmuramoylalanine-D-glutamate ligase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSQYSHIVL GLGATGLSVV RYLCGKGITP LVMDSRRQPP GAETLASSFP EVKLIAGGFD  60
   61 CRYLVQATQI IISPGIAMNT PEVRAALDMG IEVIGDVELF AREIADRKPC VIGITGSNGK 120
  121 TTVTTLVGEM LREAGIAVAV GGNIGIPALD LLKENADIFV LELSSFQLET THSLNCVAST 180
  181 CLNVTEDHMD RYSDMDAYRK AKLRLYHQSR SIIFNRDDAL TIPTEPMNQN SFGLAPPEGD 240
  241 EWGICDSKIY HGHSEIMPIT EVSLIGSHNH ANLLAAMALV YAVGVDKQVM ANVARTFTGL 300
  301 SHRCEVVGVK GGVTYVNDSK ATNVGATVAA LDGLSDHLGD IILIAGGDGK GADFSPLEEP 360
  361 LTKVTHLITL GRDGNKIAAL KEGAIKVDSM AAAVAKAAQL ATSGDIVLLS PACASLDMYS 420
  421 NFMARGDDFR SQVEQLDGE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..439] PSI-BLAST 77.522879 No description for 2jffA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • acid-amino acid ligase activity
    		•  4.86493054281191 bayes_pls_golite062009
  • catalytic activity
    		•  3.03081854683329 bayes_pls_golite062009
  • UDP-N-acetylmuramate-L-alanine ligase activity
    		•  2.62956763198067 bayes_pls_golite062009
  • UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase activity
    		•  2.38541436302257 bayes_pls_golite062009
  • ligase activity
    		•  2.2556848409907 bayes_pls_golite062009
  • ligase activity, forming carbon-nitrogen bonds
    		•  2.19206014001612 bayes_pls_golite062009
  • UDP-N-acetylmuramoylalanine-D-glutamate ligase activity
    		•  1.471039191151 bayes_pls_golite062009
  • UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
    		•  1.15437935952018 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.59

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle