YRC Public Data Repository - Protein Structure Prediction

Protein:	ILVD_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	619 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ILVD_SHEON.

Description	E-value	Query Range	Subject Range
ILVD_SHESR - Dihydroxy-acid dehydratase OS=Shewanella sp. (strain MR-7) GN=ilvD PE=3 SV=1	964.0	[0..1]	[619..1]
ILVD_SHESM - Dihydroxy-acid dehydratase OS=Shewanella sp. (strain MR-4) GN=ilvD PE=3 SV=1	963.0	[0..1]	[619..1]
ILVD_SHESA - Dihydroxy-acid dehydratase OS=Shewanella sp. (strain ANA-3) GN=ilvD PE=3 SV=1	962.0	[0..1]	[619..1]
ILVD_SHEPC - Dihydroxy-acid dehydratase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=ilvD PE=3 SV=...	958.0	[0..1]	[619..1]
ILVD_VIBPA - Dihydroxy-acid dehydratase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=ilvD P... ILVD_VIBPA - Dihydroxy-acid dehydratase OS=Vibrio parahaemolyticus GN=ilvD PE=3 SV=1	950.0	[0..1]	[618..1]
gi\|91226246, gi\|... - gi\|91226246\|ref\|ZP_01261086.1\| dihydroxy-acid dehydratase [Vibrio alginolyticus 12G01], gi\|91189257\|...	949.0	[0..1]	[618..1]
ILVD_SHEB5 - Dihydroxy-acid dehydratase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=ilvD PE=3 SV=1	949.0	[0..1]	[619..1]
ILVD_SHEB9 - Dihydroxy-acid dehydratase OS=Shewanella baltica (strain OS195) GN=ilvD PE=3 SV=1	949.0	[0..1]	[619..1]
gi\|254229982, gi... - gi\|254229982\|ref\|ZP_04923383.1\| dihydroxy-acid dehydratase [Vibrio sp. Ex25], gi\|194538929\|ref\|YP_00...	947.0	[0..1]	[618..1]
ILVD_VIBVU - Dihydroxy-acid dehydratase OS=Vibrio vulnificus (strain CMCP6) GN=ilvD PE=3 SV=1 ILVD_VIBVU - Dihydroxy-acid dehydratase OS=Vibrio vulnificus GN=ilvD PE=3 SV=1	946.0	[0..1]	[618..1]

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Predicted Domain #1

Region A:
Residues: [1-619]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKLRSATST EGRNMAGARA LWRATGVKDN DFGKPIIAIA NSFTQFVPGH VHLKDMGSLV  60
   61 ASAIEEAGGI AKEFNTIAVD DGIAMGHGGM LYSLPSRELI ADSVEYMVNA HCADALVCIS 120
  121 NCDKITPGML MAALRLNIPV VFVSGGPMEA GKTKLSDKLI KLDLVDAMVA AADSSVSDED 180
  181 SAKIERSACP TCGSCSGMFT ANSMNCLTEA LGLSLPGNGS MLATHSDRRE LFLEAGRRVM 240
  241 ALTKRYYEQD DTSALPRNIA CFKAFENATA LDIAMGGSSN TVLHLLAAAQ EAEVAFTMDD 300
  301 IDRMSRLVPH LCKVAPSTPK YHMEDVHRAG GVMGILGELD RAGLLHTDVP HVAADAGGNL 360
  361 KSVLAKYDVM QTQDDNVKQF FMAGPAGIPT TKAFSQDCRW PSLDDDRREG CIRSREFAFS 420
  421 QEGGLAVLSG NLAENGCIVK TAGVDESNLI FVGSARVYES QDDAVAGILG GEVVAGDVVV 480
  481 IRYEGPKGGP GMQEMLYPTS YLKSRGLGKA CALITDGRFS GGTSGLSIGH VSPEAAAGGT 540
  541 IALIENGDRI EIDIPARSIK LAVSDAELAG RRETMLARGP MAWKPVGRER FVSMALKAYA 600
  601 MLATSADKGA VRDRSKLED

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	163.0
Match:	2gp4A
Description:	No description for 2gp4A was found.

Predicted functions:

Term	Confidence	Notes
3-isopropylmalate dehydratase activity	5.35660492472618	bayes_pls_golite062009
catalytic activity	1.61959327305722	bayes_pls_golite062009
carbon-oxygen lyase activity	1.16841092671386	bayes_pls_golite062009
hydro-lyase activity	1.13002130445077	bayes_pls_golite062009
lyase activity	1.11228159918123	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: