YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29343775, gi\|...
Organism:	Enterococcus faecalis V583
Length:	183 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29343775, gi|....

Description	E-value	Query Range	Subject Range
gi\|153168618, gi... - gi\|153168618\|ref\|ZP_01928441.1\| ribosomal subunit interface protein [Listeria monocytogenes FSL N1-0... gi\|254828086, gi... - gi\|254828086\|ref\|ZP_05232773.1\| hypothetical protein LmonocytogeFSL_06470 [Listeria monocytogenes FS... gi\|133731995, gi... - gi\|254937791\|ref\|ZP_05269488.1\| hypothetical protein LmonF6_11712 [Listeria monocytogenes F6900], gi... gi\|254932248, gi... - gi\|254932248\|ref\|ZP_05265607.1\| hypothetical protein LmonH_07449 [Listeria monocytogenes HPB2262], g... gi\|224499865 - gi\|224499865\|ref\|ZP_03668214.1\| ribosomal subunit interface protein [Listeria monocytogenes Finland ... gi\|224503249 - gi\|224503249\|ref\|ZP_03671556.1\| ribosomal subunit interface protein [Listeria monocytogenes FSL R2-5... gi\|47096104, gi\|... - gi\|47096104\|ref\|ZP_00233705.1\| ribosomal subunit interface protein [Listeria monocytogenes str. 1/2a... gi\|47017907, gi\|... - gi\|47093713\|ref\|ZP_00231465.1\| ribosomal subunit interface protein [Listeria monocytogenes str. 4b H... gi\|25516784, gi\|... - pir\|\|AG1388 conserved hypothetical proteins like to B. subtilis YvyD protein homolog lmo2511 [import... gi\|25517888, gi\|... - pir\|\|AI1763 conserved hypothetical protein like to B. subtilis YvyD protein homolog lin2655 [importe... gi\|46908683, gi\|... - gi\|46908683\|ref\|YP_015072.1\| ribosomal subunit interface protein [Listeria monocytogenes str. 4b F23... gi\|16804549 - gi\|16804549\|ref\|NP_466034.1\| hypothetical protein lmo2511 [Listeria monocytogenes EGD-e] gi\|16801716 - gi\|16801716\|ref\|NP_471984.1\| hypothetical protein lin2655 [Listeria innocua Clip11262] gi\|255521850 - gi\|255521850\|ref\|ZP_05389087.1\| hypothetical protein LmonocFSL_11602 [Listeria monocytogenes FSL J1-... gi\|255028457 - gi\|255028457\|ref\|ZP_05300408.1\| hypothetical protein LmonL_03211 [Listeria monocytogenes LO28] gi\|255025544 - gi\|255025544\|ref\|ZP_05297530.1\| hypothetical protein LmonocytFSL_02963 [Listeria monocytogenes FSL J... gi\|254879163 - gi\|254879163\|ref\|ZP_05251873.1\| hypothetical protein LmonFSL_08202 [Listeria monocytogenes FSL J2-07... gi\|254853960 - gi\|254853960\|ref\|ZP_05243308.1\| hypothetical protein LmonoFSL_11909 [Listeria monocytogenes FSL R2-5... gi\|254825367 - gi\|254825367\|ref\|ZP_05230368.1\| hypothetical protein LmonFS_09392 [Listeria monocytogenes FSL J1-194... gi\|226225059, gi... - gi\|226225059\|ref\|YP_002759166.1\| Conserved hypothetical proteins like to B. subtilis YvyD protein [L... gi\|254900351, gi... - gi\|254900351\|ref\|ZP_05260275.1\| hypothetical protein LmonJ_11072 [Listeria monocytogenes J0161], gi\|... gi\|127633234, gi... - gi\|254831066\|ref\|ZP_05235721.1\| hypothetical protein Lmon1_06888 [Listeria monocytogenes 10403S], gi... gi\|254913410, gi... - gi\|254913410\|ref\|ZP_05263422.1\| hypothetical protein LmonJ2_11462 [Listeria monocytogenes J2818], gi...	226.0	[0..1]	[183..1]
gi\|91804599, gi\|... - gi\|92088596\|ref\|ZP_01273557.1\| Sigma 54 modulation protein/ribosomal protein S30EA [Lactobacillus re...	223.0	[0..1]	[183..1]
gi\|227530706, gi... - gi\|227530706\|ref\|ZP_03960755.1\| ribosome-associated inhibitor protein Y [Lactobacillus reuteri MM4-1... gi\|227071538, gi... - gi\|227363438\|ref\|ZP_03847562.1\| ribosome-associated inhibitor protein Y [Lactobacillus reuteri MM2-3... gi\|227955926, gi... - gi\|227976164\|ref\|ZP_04024424.1\| ribosome-associated inhibitor protein Y [Lactobacillus reuteri SD211... gi\|227545123, gi... - gi\|227545123\|ref\|ZP_03975172.1\| ribosome-associated inhibitor protein Y [Lactobacillus reuteri CF48-... gi\|89079187, gi\|... - gi\|89090991\|ref\|ZP_01164021.1\| Sigma 54 modulation protein/ribosomal protein S30EA [Lactobacillus re...	223.0	[0..1]	[183..1]
gi\|89084655, gi\|... - gi\|89100631\|ref\|ZP_01173489.1\| ribosomal subunit interface protein [Bacillus sp. NRRL B-14911], gi\|8...	222.0	[0..2]	[183..1]
gi\|116098622, gi... - gi\|116333275\|ref\|YP_794802.1\| ribosome-associated protein Y (PSrp-1) [Lactobacillus brevis ATCC 367]...	221.0	[0..1]	[183..1]
gi\|254044704, gi... - gi\|254555777\|ref\|YP_003062194.1\| ribosomal protein S30EA [Lactobacillus plantarum JDM1], gi\|25404470... gi\|28270431, gi\|... - gi\|28377598\|ref\|NP_784490.1\| ribosomal protein S30EA [Lactobacillus plantarum WCFS1], gi\|28270431\|em... gi\|227896504, gi... - gi\|227896504\|ref\|ZP_04014309.1\| ribosome-associated inhibitor protein Y [Lactobacillus plantarum sub...	220.0	[0..1]	[183..1]
gi\|48823748 - ref\|ZP_00285252.1\| COG1544: Ribosome-associated protein Y (PSrp-1) [Enterococcus faecium] gi\|69249984, gi\|... - gi\|69249984\|ref\|ZP_00605075.1\| Sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus fae...	219.0	[0..1]	[183..1]
gi\|89201187, gi\|... - gi\|89201187\|ref\|ZP_01179933.1\| Sigma 54 modulation protein/ribosomal protein S30EA [Bacillus cereus ...	217.0	[0..2]	[182..1]
YVYD_BACSU - Putative sigma-54 modulation protein OS=Bacillus subtilis (strain 168) GN=yvyD PE=1 SV=2 gi\|221325008 - gi\|221325008\|ref\|ZP_03606302.1\| hypothetical protein BsubsS_19136 [Bacillus subtilis subsp. subtilis... gi\|221320723 - gi\|221320723\|ref\|ZP_03602017.1\| hypothetical protein BsubsJ_18980 [Bacillus subtilis subsp. subtilis... gi\|221315808 - gi\|221315808\|ref\|ZP_03597613.1\| hypothetical protein BsubsN3_19017 [Bacillus subtilis subsp. subtili... YVYD_BACSU - Uncharacterized protein yvyD OS=Bacillus subtilis GN=yvyD PE=3 SV=2	216.0	[0..2]	[182..1]
gi\|28210085, gi\|... - gi\|28210085\|ref\|NP_781029.1\| SSU ribosomal protein S30P [Clostridium tetani E88], gi\|28202521\|gb\|AAO...	216.0	[0..2]	[183..1]

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Predicted Domain #1

Region A:
Residues: [1-183]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRYNVRGEN IEVTEAIRDY VEKKVGKLER YFSDSPEATV HVNLKVYTEK TAKVEVTIPL  60
   61 PYLVLRAEET SPDLYASIDL VVDKLERQIR KFKTKINRKS RETGRNNTKA AVFLVGEETE 120
  121 ETPSELDIVR TKRLSLKPMD SEEAVLQMNM LGHNFFIFED AETNGTSIVY RRKDGKYGLI 180
  181 ETD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.39794
Match:	1n3gA
Description:	Ribosome binding protein Y (YfiA homologue)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.47304811799096	bayes_pls_golite062009
protein binding	0.411183424287687	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: