YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39984599, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	296 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39984599, gi|....

Description	E-value	Query Range	Subject Range
gi\|88935024, gi\|... - gi\|88935024\|ref\|ZP_01140662.1\| Cation efflux protein [Geobacter uraniumreducens Rf4], gi\|88918289\|gb...	225.0	[0..1]	[296..1]
gi\|118580214, gi... - gi\|71837153\|ref\|ZP_00676919.1\| Cation efflux protein [Pelobacter propionicus DSM 2379], gi\|71742334\|...	222.0	[0..1]	[296..1]
gi\|19914617, gi\|... - gi\|20089689\|ref\|NP_615764.1\| cation efflux system protein [Methanosarcina acetivorans C2A], gi\|19914...	222.0	[0..8]	[294..79]
FIEF_SALCH - Cation-efflux pump FieF OS=Salmonella choleraesuis (strain SC-B67) GN=fieF PE=3 SV=1 FIEF_SALCH - Cation-efflux pump FieF OS=Salmonella choleraesuis GN=fieF PE=3 SV=1 FIEF_SALCH - Cation-efflux pump fieF OS=Salmonella choleraesuis GN=fieF PE=3 SV=1	221.0	[0..2]	[292..1]
gi\|48846804, gi\|... - gi\|78222078\|ref\|YP_383825.1\| cation efflux protein [Geobacter metallireducens GS-15], gi\|78193333\|gb...	220.0	[0..1]	[296..1]
gi\|221565816, gi... - gi\|222056527\|ref\|YP_002538889.1\| cation diffusion facilitator family transporter [Geobacter sp. FRC-...	218.0	[0..1]	[296..1]
gi\|73669641, gi\|... - gi\|73669641\|ref\|YP_305656.1\| cation efflux system protein [Methanosarcina barkeri str. Fusaro], gi\|7...	218.0	[0..8]	[294..70]
gi\|193063957, gi... - gi\|75258102\|ref\|ZP_00729563.1\| COG0053: Predicted Co/Zn/Cd cation transporters [Escherichia coli E22... gi\|188490616, gi... - gi\|75513899\|ref\|ZP_00736252.1\| COG0053: Predicted Co/Zn/Cd cation transporters [Escherichia coli 536... FIEF_ECOLI, YIIP... - (P32159) Hypothetical UPF0018 protein yiiP, Ferrous-iron efflux pump fieF - Escherichia coli FIEF_SHIDS - Cation-efflux pump FieF OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=fieF PE=3 SV=1 gi\|15834094, gi\|... - gi\|15834094\|ref\|NP_312867.1\| ferrous iron efflux protein F [Escherichia coli O157:H7 str. Sakai], gi... gi\|89110114, gi\|... - gi\|89110114\|ref\|AP_003894.1\| zinc transporter [Escherichia coli str. K-12 substr. W3110], gi\|8567614... gi\|124501278, gi... - gi\|124527576\|ref\|ZP_01699041.1\| cation diffusion facilitator family transporter [Escherichia coli B]... FIEF_ECODH - Ferrous-iron efflux pump FieF OS=Escherichia coli (strain K12 / DH10B) GN=fieF PE=3 SV=1 gi\|168799508, gi... - gi\|189378029\|gb\|EDU96445.1\| cation-efflux pump FieF [Escherichia coli O157:H7 str. EC508], gi\|168799... gi\|194438279, gi... - gi\|83586241\|ref\|ZP_00924877.1\| COG0053: Predicted Co/Zn/Cd cation transporters [Escherichia coli 101... gi\|208807647, gi... - gi\|208807647\|ref\|ZP_03249984.1\| cation-efflux pump FieF [Escherichia coli O157:H7 str. EC4206], gi\|2... FIEF_ECO24 - Ferrous-iron efflux pump FieF OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=fieF PE=3 SV=1 gi\|195937556 - gi\|195937556\|ref\|ZP_03082938.1\| ferrous iron efflux protein F [Escherichia coli O157:H7 str. EC4024] FIEF_ECOHS - Ferrous-iron efflux pump FieF OS=Escherichia coli O9:H4 (strain HS) GN=fieF PE=3 SV=1 gi\|208739247, gi... - gi\|208819124\|ref\|ZP_03259444.1\| cation-efflux pump FieF [Escherichia coli O157:H7 str. EC4042], gi\|2... gi\|194414468, gi... - gi\|75211271\|ref\|ZP_00711370.1\| COG0053: Predicted Co/Zn/Cd cation transporters [Escherichia coli B17... gi\|208814275, gi... - gi\|208814275\|ref\|ZP_03255604.1\| cation-efflux pump FieF [Escherichia coli O157:H7 str. EC4045], gi\|2... gi\|191166457, gi... - gi\|75230436\|ref\|ZP_00716922.1\| COG0053: Predicted Co/Zn/Cd cation transporters [Escherichia coli B7A... FIEF_ECOSE - Ferrous-iron efflux pump FieF OS=Escherichia coli (strain SE11) GN=fieF PE=3 SV=1 gi\|192958574, gi... - gi\|75238358\|ref\|ZP_00722357.1\| COG0053: Predicted Co/Zn/Cd cation transporters [Escherichia coli E11... FIEF_ECO5E - Ferrous-iron efflux pump FieF OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=fieF PE=3 SV=1 gi\|188016734, gi... - gi\|188016734\|gb\|EDU54856.1\| cation-efflux pump FieF [Escherichia coli O157:H7 str. EC4113], gi\|16874... gi\|168761705, gi... - gi\|189367900\|gb\|EDU86316.1\| cation-efflux pump FieF [Escherichia coli O157:H7 str. EC4501], gi\|16876... gi\|189357163, gi... - gi\|189357163\|gb\|EDU75582.1\| cation-efflux pump FieF [Escherichia coli O157:H7 str. EC4401], gi\|16875... gi\|187769152, gi... - gi\|187769152\|gb\|EDU32996.1\| cation-efflux pump FieF [Escherichia coli O157:H7 str. EC4196], gi\|16877... FIEF_ECO57 - Ferrous-iron efflux pump FieF OS=Escherichia coli O157:H7 GN=fieF PE=3 SV=1 gi\|189362742, gi... - gi\|189362742\|gb\|EDU81161.1\| cation-efflux pump FieF [Escherichia coli O157:H7 str. EC4486], gi\|16876... EG11873 - ferrous iron and zinc transporter / Ferrous-iron and zinc efflux pump; cation diffusion facilitator ... EG11873 - ferrous iron and zinc transporter / Ferrous-iron and zinc efflux pump; cation diffusion facilitator ... gi\|189373434, gi... - gi\|189373434\|gb\|EDU91850.1\| cation-efflux pump FieF [Escherichia coli O157:H7 str. EC869], gi\|168786... gi\|15804504, gi\|... - gi\|15804504\|ref\|NP_290544.1\| ferrous iron efflux protein F [Escherichia coli O157:H7 EDL933], gi\|125... gi\|189001566, gi... - gi\|189001566\|gb\|EDU70552.1\| cation-efflux pump FieF [Escherichia coli O157:H7 str. EC4076], gi\|16878... FIEF_ECOBW - Ferrous-iron efflux pump FieF OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=fieF PE=3 SV=1 FIEF_ECOLC - Ferrous-iron efflux pump FieF OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=fieF PE=... gi\|251787178, gi... - gi\|251787178\|ref\|YP_003001482.1\| hypothetical protein B21_03749 [Escherichia coli BL21], gi\|24237945... gi\|253775446, gi... - gi\|254290616\|ref\|YP_003056364.1\| ferrous iron efflux protein F [Escherichia coli BL21(DE3)], gi\|2539... gi\|226838609, gi... - gi\|254039173\|ref\|ZP_04873223.1\| cation-efflux pump FieF [Escherichia sp. 1_1_43], gi\|226838609\|gb\|EE... gi\|253975766, gi... - gi\|254163865\|ref\|YP_003046973.1\| ferrous iron efflux protein F [Escherichia coli B str. REL606], gi\|... gi\|254795914, gi... - gi\|254795914\|ref\|YP_003080751.1\| zinc transporter [Escherichia coli O157:H7 str. TW14359], gi\|254595... FIEF_ECO8A - Ferrous-iron efflux pump FieF OS=Escherichia coli O8 (strain IAI1) GN=fieF PE=3 SV=1 gi\|217325333, gi... - gi\|217325333\|ref\|ZP_03441417.1\| cation-efflux pump FieF [Escherichia coli O157:H7 str. TW14588], gi\|... FIEF_ECOLU - Ferrous-iron efflux pump FieF OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=fieF PE=3 S... FIEF_ECO55 - Ferrous-iron efflux pump FieF OS=Escherichia coli (strain 55989 / EAEC) GN=fieF PE=3 SV=1	218.0	[0..2]	[295..1]
gi\|21228880, gi\|... - gi\|21228880\|ref\|NP_634802.1\| cobalt-zinc-cadmium resistance protein [Methanosarcina mazei Go1], gi\|2...	218.0	[0..1]	[290..30]

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Predicted Domain #1

Region A:
Residues: [1-296]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLREERFERA EKVIHLGFWV NAVLMVMKLA AGHFGGSEAV FADGVESGCD FVALLFTMVA  60
   61 LRVGRKPFDA RHPYGHGKAE NVAAFVIALV IGGAGMFILV QSVRTIMSRS WQTPDLIAVA 120
  121 AALLTIVIKE GLYRYSVAAG RKLDSPALQA VAMDHRKDAL TSVGTLVGVV GAYAGFGIMD 180
  181 PLAAGLTSLF IFKIGYETFR SALHDLMDGQ PPGDFIRAVT DLAEGVEHVH EIRGRRSGQY 240
  241 IIIDLKLDMD PEMTVKQSHD IATCVKKLIF ERFPNVGDVM IHINPHDEEH EDLIRL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.69897
Match:	2qfiA
Description:	No description for 2qfiA was found.

Predicted functions:

Term	Confidence	Notes
cation transmembrane transporter activity	4.80415740186568	bayes_pls_golite062009
ion transmembrane transporter activity	4.7111088918389	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	4.31582321262476	bayes_pls_golite062009
cadmium ion transmembrane transporter activity	3.70168909103546	bayes_pls_golite062009
transporter activity	2.75060749825863	bayes_pls_golite062009
transmembrane transporter activity	2.61478776136804	bayes_pls_golite062009
substrate-specific transporter activity	2.49211952065411	bayes_pls_golite062009
transition metal ion transmembrane transporter activity	1.29284396884348	bayes_pls_golite062009
iron ion transmembrane transporter activity	1.28901626534199	bayes_pls_golite062009
efflux transmembrane transporter activity	1.25549862417229	bayes_pls_golite062009
metal ion transmembrane transporter activity	1.01332825422669	bayes_pls_golite062009
binding	0.80253540865533	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	0.4725448545847	bayes_pls_golite062009
cation channel activity	0.114605430567645	bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity	0.0866732167896778	bayes_pls_golite062009
protein binding	0.0557829197821959	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: