YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30262318, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	296 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30262318, gi|....

Description	E-value	Query Range	Subject Range
gi\|51976618, gi\|... - gi\|52143149\|ref\|YP_083680.1\| cation efflux protein [Bacillus cereus E33L], gi\|51976618\|gb\|AAU18168.1... gi\|118416958, gi... - gi\|118477733\|ref\|YP_894884.1\| cation efflux protein [Bacillus thuringiensis str. Al Hakam], gi\|11841...	1.0E-60	[1..296]	[1..296]
gi\|49479997, gi\|... - gi\|49479997\|ref\|YP_036420.1\| cation efflux protein [Bacillus thuringiensis serovar konkukian str. 97... gi\|228661653, gi... - gi\|229121864\|ref\|ZP_04251084.1\| CDF family cation diffusion facilitator [Bacillus cereus 95/8201], g... gi\|228832275, gi... - gi\|228927379\|ref\|ZP_04090436.1\| CDF family cation diffusion facilitator [Bacillus thuringiensis sero... gi\|228914913, gi... - gi\|228914913\|ref\|ZP_04078518.1\| CDF family cation diffusion facilitator [Bacillus thuringiensis sero...	2.0E-60	[1..296]	[1..296]
gi\|29895944, gi\|... - gi\|30020393\|ref\|NP_832024.1\| cobalt-zinc-cadmium resistance protein czcD [Bacillus cereus ATCC 14579... gi\|75763125, gi\|... - gi\|75763125\|ref\|ZP_00742900.1\| Cobalt-zinc-cadmium resistance protein czcD [Bacillus thuringiensis s...	5.0E-60	[1..296]	[1..296]
gi\|47565670, gi\|... - gi\|47565670\|ref\|ZP_00236710.1\| cation efflux family protein [Bacillus cereus G9241], gi\|47557306\|gb\|... gi\|229139012, gi... - gi\|229139012\|ref\|ZP_04267589.1\| CDF family cation diffusion facilitator [Bacillus cereus BDRD-ST26],... gi\|228985404, gi... - gi\|228985404\|ref\|ZP_04145563.1\| CDF family cation diffusion facilitator [Bacillus thuringiensis sero... gi\|228586891, gi... - gi\|229196535\|ref\|ZP_04323279.1\| CDF family cation diffusion facilitator [Bacillus cereus m1293], gi\|... gi\|206973626, gi... - gi\|206973626\|ref\|ZP_03234544.1\| cation efflux family protein [Bacillus cereus H3081.97], gi\|20674778... gi\|229155897, gi... - gi\|229155897\|ref\|ZP_04283998.1\| CDF family cation diffusion facilitator [Bacillus cereus ATCC 4342],... gi\|217959819, gi... - gi\|217959819\|ref\|YP_002338371.1\| cation efflux family protein [Bacillus cereus AH187], gi\|217063886\|... gi\|222095904, gi... - gi\|222095904\|ref\|YP_002529961.1\| cation efflux protein [Bacillus cereus Q1], gi\|221239962\|gb\|ACM1267...	5.0E-59	[4..296]	[1..293]
gi\|42781406, gi\|... - gi\|42781406\|ref\|NP_978653.1\| cation efflux family protein [Bacillus cereus ATCC 10987], gi\|42737328\|...	9.0E-59	[4..296]	[1..293]
gi\|89156555, gi\|... - gi\|89205539\|ref\|ZP_01184108.1\| Cation efflux protein [Bacillus weihenstephanensis KBAB4], gi\|8915655...	3.0E-58	[4..296]	[1..293]
gi\|25389201 - pir\|\|F95180 cation efflux family protein [imported] - Streptococcus pneumoniae (strain TIGR4) gi\|111658460, gi... - gi\|15901395\|ref\|NP_345999.1\| cation efflux family protein [Streptococcus pneumoniae TIGR4], gi\|14973...	1.0E-57	[3..295]	[2..296]
gi\|15903454, gi\|... - gi\|15903454\|ref\|NP_359004.1\| cation efflux family protein [Streptococcus pneumoniae R6], gi\|15459063... gi\|116077747, gi... - gi\|116517171\|ref\|YP_816844.1\| cation efflux family protein [Streptococcus pneumoniae D39], gi\|116077... gi\|25509049 - pir\|\|B98048 conserved hypothetical protein spr1411 [imported] - Streptococcus pneumoniae (strain R6)	2.0E-57	[3..295]	[2..296]
gi\|23098578, gi\|... - gi\|23098578\|ref\|NP_692044.1\| cation efflux system [Oceanobacillus iheyensis HTE831], gi\|22776804\|dbj...	7.0E-57	[4..292]	[2..290]
gi\|19914617, gi\|... - gi\|20089689\|ref\|NP_615764.1\| cation efflux system protein [Methanosarcina acetivorans C2A], gi\|19914...	8.0E-57	[10..289]	[79..359]

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Predicted Domain #1

Region A:
Residues: [1-296]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKIDTLSNK EADKGAIVSI LAYIFLSSMK IIISYITLSS ALRADGLNNL TDIGASLAIL  60
   61 IGLKISRKPR DPDHPYGHSR AEQIASLVAS FIMATVGLEV VISAIQSFLN PKQAAPNVLA 120
  121 AWVALFSAVV MYCVYLYTKK IAARTKSKSL EAAAKDNLSD ALVSIGTVVG IVGSQFQMPI 180
  181 LDPIAALIVG LIICKTAWEI FVEASHMLTD GIDPDKMEEY ADAIEHIGGV ENIVDIKARM 240
  241 YGNQTYVDIT IEVDARMDVG ESHCITDNIE AMLRKKFGIY HAHIHVEPME KEPIMT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.69897
Match:	2qfiA
Description:	No description for 2qfiA was found.

Predicted functions:

Term	Confidence	Notes
cation transmembrane transporter activity	4.80415740186568	bayes_pls_golite062009
ion transmembrane transporter activity	4.7111088918389	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	4.31582321262476	bayes_pls_golite062009
cadmium ion transmembrane transporter activity	3.70168909103546	bayes_pls_golite062009
transporter activity	2.75060749825863	bayes_pls_golite062009
transmembrane transporter activity	2.61478776136804	bayes_pls_golite062009
substrate-specific transporter activity	2.49211952065411	bayes_pls_golite062009
transition metal ion transmembrane transporter activity	1.29284396884348	bayes_pls_golite062009
iron ion transmembrane transporter activity	1.28901626534199	bayes_pls_golite062009
efflux transmembrane transporter activity	1.25549862417229	bayes_pls_golite062009
metal ion transmembrane transporter activity	1.01332825422669	bayes_pls_golite062009
binding	0.80253540865533	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	0.4725448545847	bayes_pls_golite062009
cation channel activity	0.114605430567645	bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity	0.0866732167896778	bayes_pls_golite062009
protein binding	0.0557829197821959	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: