YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|50119449, gi\|...
Organism:	Pectobacterium atrosepticum SCRI1043
Length:	261 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|50119449, gi|....

Description	E-value	Query Range	Subject Range
gi\|40804950 - gi\|40804950\|gb\|AAR91743.1\| PhnP [Pseudomonas stutzeri]	184.0	[0..12]	[259..1]
gi\|71557968, gi\|... - gi\|71737415\|ref\|YP_275109.1\| carbon-phosphorus lyase complex accessory protein [Pseudomonas syringae...	176.0	[0..12]	[259..1]
gi\|124262218, gi... - gi\|124263006\|ref\|YP_001023476.1\| carbon-phosphorus lyase complex accessory protein [Methylibium petr... gi\|47572359 - gi\|47572359\|ref\|ZP_00242403.1\| COG1235: Metal-dependent hydrolases of the beta-lactamase superfamily...	176.0	[0..12]	[261..1]
tr\|Q882Q8\|Q882Q8... - Phosphonate metabolism protein, PhnP OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_256... gi\|28869758, gi\|... - gi\|28869758\|ref\|NP_792377.1\| carbon-phosphorus lyase complex accessory protein [Pseudomonas syringae...	174.0	[0..12]	[259..1]
gi\|63256206, gi\|... - gi\|66045499\|ref\|YP_235340.1\| carbon-phosphorus lyase complex accessory protein [Pseudomonas syringae...	171.0	[0..12]	[259..1]
gi\|152985004, gi... - gi\|94413480\|ref\|ZP_01293364.1\| hypothetical protein PaerP_01004771 [Pseudomonas aeruginosa PA7], gi\|...	171.0	[0..12]	[261..1]
gi\|11348009 - pir\|\|F83223 conserved hypothetical protein PA3372 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|9949507, gi\|1... - gi\|9949507\|gb\|AAG06760.1\|AE004759_7 conserved hypothetical protein [Pseudomonas aeruginosa PAO1], gi...	170.0	[0..12]	[261..1]
gi\|46164198, gi\|... - gi\|46164198\|ref\|ZP_00204994.1\| COG1235: Metal-dependent hydrolases of the beta-lactamase superfamily...	169.0	[0..12]	[261..1]
gi\|152961914, gi... - gi\|77631503\|ref\|ZP_00794089.1\| COG1235: Metal-dependent hydrolases of the beta-lactamase superfamily...	169.0	[0..12]	[261..1]
gi\|218930479, gi... - gi\|218930479\|ref\|YP_002348354.1\| carbon-phosphorus lyase complex accessory protein [Yersinia pestis ... gi\|166010196, gi... - gi\|166010196\|ref\|ZP_02231094.1\| phosphonate metabolism protein PhnP [Yersinia pestis biovar Antiqua ... gi\|51588142, gi\|... - gi\|51594860\|ref\|YP_069051.1\| carbon-phosphorus lyase complex accessory protein [Yersinia pseudotuber... gi\|166204522, gi... - gi\|166214290\|ref\|ZP_02240325.1\| phosphonate metabolism protein PhnP [Yersinia pestis biovar Antiqua ... Q66F32\|Q66F32_YERPS - PhnP protein - Yersinia pseudotuberculosis gi\|167399439, gi... - gi\|167399439\|ref\|ZP_02304963.1\| phosphonate metabolism protein PhnP [Yersinia pestis biovar Antiqua ... gi\|229839114, gi... - gi\|229839114\|ref\|ZP_04459273.1\| PhnP protein [Yersinia pestis biovar Orientalis str. PEXU2], gi\|2296... gi\|166961410, gi... - gi\|167420604\|ref\|ZP_02312357.1\| phosphonate metabolism protein PhnP [Yersinia pestis biovar Oriental... gi\|229896602, gi... - gi\|229896602\|ref\|ZP_04511769.1\| PhnP protein [Yersinia pestis Pestoides A], gi\|229700380\|gb\|EEO88412... gi\|77634886, gi\|... - gi\|77634886\|ref\|ZP_00796978.1\| COG1235: Metal-dependent hydrolases of the beta-lactamase superfamily... gi\|167423640, gi... - gi\|167423640\|ref\|ZP_02315393.1\| phosphonate metabolism protein PhnP [Yersinia pestis biovar Mediaeva... gi\|229899678, gi... - gi\|229899678\|ref\|ZP_04514819.1\| PhnP protein [Yersinia pestis biovar Orientalis str. India 195], gi\|... gi\|167467364 - gi\|167467364\|ref\|ZP_02332068.1\| phosphonate metabolism protein PhnP [Yersinia pestis FV-1] gi\|186893869, gi... - gi\|186893869\|ref\|YP_001870981.1\| carbon-phosphorus lyase complex accessory protein [Yersinia pseudot... gi\|165922297, gi... - gi\|165925685\|ref\|ZP_02221517.1\| phosphonate metabolism protein PhnP [Yersinia pestis biovar Oriental... gi\|165936631, gi... - gi\|89105057\|ref\|ZP_01177584.1\| COG1235: Metal-dependent hydrolases of the beta-lactamase superfamily... gi\|108780871, gi... - gi\|108808958\|ref\|YP_652874.1\| carbon-phosphorus lyase complex accessory protein [Yersinia pestis Ant... gi\|229682326, gi... - gi\|229900987\|ref\|ZP_04516111.1\| PhnP protein [Yersinia pestis Nepal516], gi\|229682326\|gb\|EEO78418.1\|... gi\|25347556 - pir\|\|AB0421 PhnP protein [imported] - Yersinia pestis (strain CO92) gi\|149289132, gi... - gi\|153997495\|ref\|ZP_02022595.1\| PhnP protein [Yersinia pestis CA88-4125], gi\|149289132\|gb\|EDM39212.1... gi\|45440471, gi\|... - gi\|45440471\|ref\|NP_992010.1\| carbon-phosphorus lyase complex accessory protein [Yersinia pestis biov... gi\|145600529, gi... - gi\|145600529\|ref\|YP_001164605.1\| carbon-phosphorus lyase complex accessory protein [Yersinia pestis ... gi\|21957440, gi\|... - gi\|22124633\|ref\|NP_668056.1\| carbon-phosphorus lyase complex accessory protein [Yersinia pestis KIM]...	169.0	[0..12]	[261..1]

Back

Predicted Domain #1

Region A:
Residues: [1-261]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTNIAANSG GIVFHFLGTG GAQQVPAFGC ECEVCQQAQR NESKRRRACC AAITTKDRII  60
   61 LIDAGLPELS PYLLPYPQRH ILLTHYHMDH VQGLFPLRWG YGEPIPVFGP PDEAGCDDLF 120
  121 KHPGILHFQK PLMAFQPFEL DGIRITPVPL IHSKLTYGYL IQTPTHTLAY LTDTIGLPPE 180
  181 TTQFLASHTL DYAIVDCSHP PQTMLPRNHN DITRALEIFT QLNPKQLYLT HISHELDRWL 240
  241 QTQTLLPENV HAAYDGLVLG L

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.0
Match:	1y44A
Description:	Crystal structure of RNase Z
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.31184084417389	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: