YRC Public Data Repository - Protein Structure Prediction

Protein:	ATPD_AGRFC
Organism:	Agrobacterium tumefaciens str. C58
Length:	188 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATPD_AGRFC.

Description	E-value	Query Range	Subject Range
gi\|86283556, gi\|... - gi\|86359454\|ref\|YP_471346.1\| F0F1 ATP synthase subunit delta [Rhizobium etli CFN 42], gi\|86283556\|gb...	203.0	[0..1]	[188..46]
gi\|25290483 - pir\|\|AH2898 ATP Synthase delta chain atpH [imported] - Agrobacterium tumefaciens (strain C58, Dupont... gi\|159185298, gi... - gi\|17936500\|ref\|NP_533290.1\| ATP synthase subunit D [Agrobacterium tumefaciens str. C58], gi\|1774112...	196.0	[0..3]	[188..1]
ATPD_RHIL3 - ATP synthase subunit delta OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=atpH PE=3 SV=1	195.0	[0..1]	[188..1]
ATPD_SINMW - ATP synthase subunit delta OS=Sinorhizobium medicae (strain WSM419) GN=atpH PE=3 SV=1	193.0	[0..1]	[188..1]
ATPD_BRUSU - ATP synthase subunit delta OS=Brucella suis GN=atpH PE=3 SV=1 ATPD_BRUSU - ATP synthase subunit delta OS=Brucella suis biovar 1 (strain 1330) GN=atpH PE=3 SV=1	191.0	[0..3]	[188..1]
gi\|254689955 - gi\|254689955\|ref\|ZP_05153209.1\| F0F1 ATP synthase subunit delta [Brucella abortus bv. 6 str. 870] gi\|254698106 - gi\|254698106\|ref\|ZP_05159934.1\| F0F1 ATP synthase subunit delta [Brucella abortus bv. 2 str. 86/8/59... gi\|254730990 - gi\|254730990\|ref\|ZP_05189568.1\| F0F1 ATP synthase subunit delta [Brucella abortus bv. 4 str. 292] ATPD_BRUA2 - ATP synthase subunit delta OS=Brucella abortus (strain 2308) GN=atpH PE=3 SV=1 ATPD_BRUAB - ATP synthase subunit delta OS=Brucella abortus GN=atpH PE=3 SV=1 ATPD_BRUAB - ATP synthase subunit delta OS=Brucella abortus biovar 1 (strain 9-941) GN=atpH PE=3 SV=1 ATPD_BRUA1 - ATP synthase subunit delta OS=Brucella abortus (strain S19) GN=atpH PE=3 SV=1	191.0	[0..3]	[188..1]
ATPD_BRUME - ATP synthase subunit delta OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) G... ATPD_BRUMB - ATP synthase subunit delta OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=atpH PE=3 SV=1 ATPD_BRUME - ATP synthase subunit delta OS=Brucella melitensis GN=atpH PE=3 SV=1	187.0	[0..3]	[188..1]
gi\|15076062 - gi\|15076062\|emb\|CAC47616.1\| PUTATIVE ATP SYNTHASE DELTA CHAIN PROTEIN [Sinorhizobium meliloti] gi\|15966790 - gi\|15966790\|ref\|NP_387143.1\| ATP synthase subunit D [Sinorhizobium meliloti 1021]	187.0	[0..3]	[188..1]
gi\|90418838, gi\|... - gi\|90418838\|ref\|ZP_01226749.1\| ATP synthase, delta subunit [Aurantimonas sp. SI85-9A1], gi\|90336918\|... gi\|90418838, gi\|... - gi\|90418838\|ref\|ZP_01226749.1\| ATP synthase, delta subunit [Aurantimonas sp. SI85-9A1], gi\|90336918\|...	184.0	[0..3]	[188..1]
gi\|78494495, gi\|... - gi\|90421701\|ref\|YP_530071.1\| F0F1 ATP synthase subunit delta [Rhodopseudomonas palustris BisB18], gi...	184.0	[0..2]	[188..17]

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Predicted Domain #1

Region A:
Residues: [1-188]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVAETSQGT SGVAERYASS LFELALEAGT VEAVQVELDK FGALLDESDD LKRLVASPVF  60
   61 SAEDQFKAIS AICEKAGIAG LAVNFLKVVA NNRRLFAVPG MIRAYRTIAA AHRGEITAEV 120
  121 TSAHALDEAQ ETELKAALKS VTGKDVAISV TVDPSILGGL IVKVGSRQID TSLRTKLSTL 180
  181 KLALKEVG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.221849
Match:	1abvA
Description:	N-TERMINAL DOMAIN OF THE DELTA SUBUNIT OF THE F1F0-ATP SYNTHASE FROM ESCHERICHIA COLI, NMR, MINIMIZED AVERAGE STRUCTURE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrogen ion transporting ATP synthase activity, rotational mechanism	14.7422820889757	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	12.9278793563887	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	11.1783751674743	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	10.0680074813957	bayes_pls_golite062009
cation transmembrane transporter activity	6.33234611151135	bayes_pls_golite062009
ion transmembrane transporter activity	6.2273693570543	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	5.80354336411519	bayes_pls_golite062009
transporter activity	4.02094516916098	bayes_pls_golite062009
substrate-specific transporter activity	3.93981768923161	bayes_pls_golite062009
transmembrane transporter activity	3.93135059223129	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: