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Protein Overview: ATPD_AGRFC

General Information:
Name(s) found: ATPD_AGRFC [Swiss-Prot]
Description(s) found:
Found 8 descriptions.
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  • ATP synthase subunit delta OS=Agrobacterium fabrum (strain C58 / ATCC 33970) GN=atpH PE=3 SV=3 [Swiss-Prot]
    • Organism: Agrobacterium tumefaciens str. C58
    Length: 188 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVAETSQGT SGVAERYASS LFELALEAGT VEAVQVELDK FGALLDESDD LKRLVASPVF  60
   61 SAEDQFKAIS AICEKAGIAG LAVNFLKVVA NNRRLFAVPG MIRAYRTIAA AHRGEITAEV 120
  121 TSAHALDEAQ ETELKAALKS VTGKDVAISV TVDPSILGGL IVKVGSRQID TSLRTKLSTL 180
  181 KLALKEVG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..188] PSI-BLAST 25.221849 N-TERMINAL DOMAIN OF THE DELTA SUBUNIT OF THE F1F0-ATP SYNTHASE FROM ESCHERICHIA COLI, NMR, MINIMIZED AVERAGE STRUCTURE

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • hydrogen ion transporting ATP synthase activity, rotational mechanism
    		•  14.7422820889757 bayes_pls_golite062009
  • hydrogen ion transmembrane transporter activity
    		•  12.9278793563887 bayes_pls_golite062009
  • monovalent inorganic cation transmembrane transporter activity
    		•  11.1783751674743 bayes_pls_golite062009
  • inorganic cation transmembrane transporter activity
    		•  10.0680074813957 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  6.33234611151135 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  6.2273693570543 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  5.80354336411519 bayes_pls_golite062009
  • transporter activity
    		•  4.02094516916098 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  3.93981768923161 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  3.93135059223129 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle