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View Structure Prediction Details

Protein: gi|25399373
Organism: Caulobacter vibrioides
Length: 318 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25399373.

Description E-value Query
Range
Subject
Range
gi|89359528, gi|... - gi|89359528|ref|ZP_01197349.1| similar to ABC-type spermidine/putrescine transport system permease c...
172.0 [0..15] [304..271]

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Predicted Domain #1
Region A:
Residues: [1-83]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFAPLDPARW SDANGFDLGP GIRRGNRMGG GVLMAKKSAP GPLEYLRRWQ MQAWLAAVFI  60
   61 FLYAPLIALM AFSFNDSKRN IVW

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [84-318]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KGFTLKYYEK LFNNSELLEA FGNSLTIAAA STVISLFLGA AVALALWRFR FPGKTAVDGA  60
   61 MALPIVVPEI CMGVAMLVFF AKVLPWPQGM PWPLNLGAII IAHVSFSFPF VAVVVRARMA 120
  121 SFNREMEEAA RDLGAGEFRT IKDVILPHMA PSLIAGALLA FTLSLDDFVI TFFTAGPDTV 180
  181 TFPVKVYSMV RFSVTPEVNA ASTVLIVLTV LLTAAALKLQ GNPAAAAGHG AKDGK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.0
Match: 2onkC
Description: No description for 2onkC was found.

Predicted functions:

Term Confidence Notes
transporter activity 4.47791794099048 bayes_pls_golite062009
transmembrane transporter activity 4.39634414867723 bayes_pls_golite062009
active transmembrane transporter activity 3.89128503869358 bayes_pls_golite062009
primary active transmembrane transporter activity 3.78071702105421 bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity 3.78024819585319 bayes_pls_golite062009
ATPase activity, coupled to movement of substances 3.76710689838502 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances 3.76710689838502 bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances 3.76480875126102 bayes_pls_golite062009
substrate-specific transporter activity 3.65928254714629 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 3.61840729006809 bayes_pls_golite062009
ATPase activity, coupled 3.13976951511862 bayes_pls_golite062009
ATPase activity 2.90304684848114 bayes_pls_golite062009
nucleoside-triphosphatase activity 2.85886572725081 bayes_pls_golite062009
pyrophosphatase activity 2.78799656158331 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 2.76854894183109 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 2.76635806953632 bayes_pls_golite062009
ion transmembrane transporter activity 2.42886654788147 bayes_pls_golite062009
cation transmembrane transporter activity 1.54974155411368 bayes_pls_golite062009
hydrolase activity 1.52360037846731 bayes_pls_golite062009
amine transmembrane transporter activity 1.35745015743741 bayes_pls_golite062009
secondary active transmembrane transporter activity 0.96228415837358 bayes_pls_golite062009
organic acid transmembrane transporter activity 0.86220210518613 bayes_pls_golite062009
carboxylic acid transmembrane transporter activity 0.851725653994868 bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions 0.69074662322395 bayes_pls_golite062009
solute:cation symporter activity 0.483541714040201 bayes_pls_golite062009
symporter activity 0.483541714040201 bayes_pls_golite062009
catalytic activity 0.427775057748038 bayes_pls_golite062009
anion transmembrane transporter activity 0.18066368771781 bayes_pls_golite062009
sugar transmembrane transporter activity 0.149318428666465 bayes_pls_golite062009
carbohydrate transmembrane transporter activity 0.0202682073710961 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle