YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7469413
Organism:	Synechocystis sp.
Length:	167 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7469413.

Description	E-value	Query Range	Subject Range
gi\|71669218, gi\|... - gi\|71677587\|ref\|ZP_00675323.1\| Protein of unknown function DUF156 [Trichodesmium erythraeum IMS101],...	137.0	[0..52]	[167..6]
gi\|186680637, gi... - gi\|23130185\|ref\|ZP_00112004.1\| COG1937: Uncharacterized protein conserved in bacteria [Nostoc puncti...	134.0	[0..54]	[167..14]
gi\|17131849, gi\|... - gi\|17230248\|ref\|NP_486796.1\| hypothetical protein all2756 [Nostoc sp. PCC 7120], gi\|17131849\|dbj\|BAB... gi\|25532323 - pir\|\|AE2150 hypothetical protein all2756 [imported] - Nostoc sp. (strain PCC 7120)	133.0	[0..54]	[167..14]
gi\|75704244, gi\|... - gi\|75910519\|ref\|YP_324815.1\| hypothetical protein Ava_4322 [Anabaena variabilis ATCC 29413], gi\|7570...	132.0	[0..54]	[167..14]
gi\|86606913 - gi\|86606913\|ref\|YP_475676.1\| hypothetical protein CYA_2277 [Cyanobacteria bacterium Yellowstone A-Pr... gi\|86555455, gi\|... - gi\|86606913\|ref\|YP_475676.1\| hypothetical protein CYA_2277 [Synechococcus sp. JA-3-3Ab], gi\|86555455...	127.0	[0..76]	[167..73]
gi\|86556487, gi\|... - gi\|86607945\|ref\|YP_476707.1\| hypothetical protein CYB_0450 [Synechococcus sp. JA-2-3B'a(2-13)], gi\|8... gi\|86607945 - gi\|86607945\|ref\|YP_476707.1\| hypothetical protein CYB_0450 [Cyanobacteria bacterium Yellowstone B-Pr...	122.0	[0..76]	[167..39]
gi\|228670001, gi... - gi\|229113483\|ref\|ZP_04242933.1\| DNA mismatch repair protein, C-terminal domain protein [Bacillus cer... gi\|116585166, gi... - gi\|190015485\|ref\|YP_001967096.1\| hypothetical protein pPER272_0232 [Bacillus cereus], gi\|190015220\|r... gi\|218848376, gi... - gi\|218848376\|ref\|YP_002455161.1\| YvgZ [Bacillus cereus AH820], gi\|218540427\|gb\|ACK92823.1\| YvgZ [Bac... gi\|44004522, gi\|... - gi\|44004522\|ref\|NP_982190.1\| hypothetical protein BCE_A0183 [Bacillus cereus ATCC 10987], gi\|4274158...	122.0	[0..80]	[166..15]
gi\|52005069, gi\|... - gi\|52787245\|ref\|YP_093074.1\| YvgZ [Bacillus licheniformis ATCC 14580], gi\|52349747\|gb\|AAU42381.1\| Yv...	122.0	[0..72]	[166..4]
gi\|221324829 - gi\|221324829\|ref\|ZP_03606123.1\| hypothetical protein BsubsS_18231 [Bacillus subtilis subsp. subtilis... CSOR_BACSU - Copper-sensing transcriptional repressor CsoR OS=Bacillus subtilis GN=csoR PE=1 SV=1 gi\|221315629 - gi\|221315629\|ref\|ZP_03597434.1\| hypothetical protein BsubsN3_18112 [Bacillus subtilis subsp. subtili... gi\|221320545 - gi\|221320545\|ref\|ZP_03601839.1\| hypothetical protein BsubsJ_18080 [Bacillus subtilis subsp. subtilis... CSOR_BACSU - Copper-sensing transcriptional repressor CsoR OS=Bacillus subtilis (strain 168) GN=csoR PE=1 SV=1	121.0	[0..70]	[166..2]

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Predicted Domain #1

Region A:
Residues: [1-80]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAMCGFGLV HTKTTISYWA KGVLPKISHQ RRKILPPANI KKNCLIGQWF YRQISTNIER  60
   61 MTSQPVPHPS ARHSHAHPHV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [81-167]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HSQESLQKLV NRLSRIEGHI RGVKTMVQEN RPCPEVLIQV AAVRGALDRV ARLILDDHMN  60
   61 ECITRAAAEG NIEQELAELK EALDRFL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.09691
Match:	2hh7A
Description:	No description for 2hh7A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits