YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|50934037, gi|...
Organism: Oryza sativa Japonica Group
Length: 608 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|50934037, gi|....

Description E-value Query
Range
Subject
Range
gi|92874462 - gi|92874462|gb|ABE82727.1| Mitochodrial transcription termination factor-related [Medicago truncatul...
439.0 [0..20] [588..38]
gi|42569224 - gi|42569224|ref|NP_179763.2| EMB2219 (EMBRYO DEFECTIVE 2219); transferase [Arabidopsis thaliana]
424.0 [0..29] [602..36]
gi|52076947, gi|... - gi|52076947|dbj|BAD45958.1| hypothetical protein [Oryza sativa Japonica Group], gi|125606623|gb|EAZ4...
328.0 [0..17] [566..32]

Back

Predicted Domain #1
Region A:
Residues: [1-195]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAATLPPSH HRLHLHLHLH TPKPSPPRRL RLAAAAAASR LQNPTTTHYP NLPPPAPPPS  60
   61 TSLVAAEEAS LAPRRTYRFP GSVPSSPTLP DTADGGLAAA AAVADDAVLR RALEVRRAVA 120
  121 GEVLVAALRG GKVGGLTYIR NLTSRMAPFV DRVVVEAAAM RRDRPELAHQ SFNARARVYI 180
  181 EESGLVALVK WFKHN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [196-369]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SMTYPQIAKV VCSSSGNLEK VRRMIKWLRS IHVKGEYLGR VLAKGDTFLS RSFEELEEII  60
   61 YYMESCGVRK DWIGHVVGRC PQLLNLSMDE LETRVRFYTD MGMNDNDFGT MVYDYPKALG 120
  121 FFSLEEMNSK VQYLKEFGLS TDELGKLMAF KPQLMACSIE ERWKPLVKYL YHLN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [370-477]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ISRDGMKRML VVQPTIFCLD LETVIAPKVQ FLQDIGVRSD AVGGVLVKFP PVLTYSLYKK  60
   61 IRPVVIFLMT KAAVKQEDIG KVIALDPQLL GCSIVRKLEV SVKYLRSL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [478-608]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GIYHFVLGQM VTDFPTLLRY NVDVLRPKYQ YLRRVMVRPL IDLVEFPRFF SYSLEDRIVP  60
   61 RHQTLVENRI NMKLRYMLTG SDEDFSQRVR EAVERRARFE AGNVEASDSQ ATTDGAEATA 120
  121 PASQDGWEAD T

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle