YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|48716846, gi\|...
Organism:	Oryza sativa Japonica Group
Length:	951 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|48716846, gi|....

Description	E-value	Query Range	Subject Range
gi\|30698494, gi\|... - gi\|37360973\|dbj\|BAC98395.1\| T7 bacteriophage-type single subunit RNA polymerase [Oryza sativa Japoni...	1093.0	[0..1]	[950..1]
RPO2B_TOBAC - DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial OS=Nicotiana tabacum GN=RPOT2-TOM PE=2 S...	1004.0	[0..1]	[950..1]
RPOT2_NICSY - DNA-directed RNA polymerase 2, chloroplastic/mitochondrial OS=Nicotiana sylvestris GN=RPOT2 PE=2 SV=...	1002.0	[0..1]	[950..1]
gi\|4559304, gi\|1... - gi\|4559304\|gb\|AAD22976.1\|AF127021_1 T7-like RNA polymerase [Zea mays], gi\|162457737\|ref\|NP_001104931...	980.0	[0..35]	[950..1]
gi\|2326363 - gi\|2326363\|emb\|CAA04491.1\| DNA-directed RNA polymerase [Arabidopsis thaliana]	980.0	[0..7]	[950..22]
gi\|62750823 - gi\|62750823\|emb\|CAC80138.1\| DNA-dependent RNA polymerase [Spinacia oleracea]	970.0	[0..32]	[950..38]
gi\|6958204 - gi\|6958204\|gb\|AAF32492.1\|AF091838_1 single-subunit RNA polymerase G [Triticum aestivum]	964.0	[0..1]	[950..1]
gi\|40255318 - gi\|40255318\|emb\|CAE52834.1\| RNA polymerase [Hordeum vulgare]	963.0	[0..154]	[950..1]

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Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSSPTPATA PISCSPSPPL HLHLTARRQT LAPPMWRRLP ARRLASALLS SSAPLPHPLH  60
   61 RSLLLLLPAA SQRLAPSQTL PRFASSSAAV AAESVSSEEV DELHHAIGEI ARGDPSVS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [119-951]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APAPAAGQEG HRRRSGRGKH SAEAMAVPAA GQEGHRRRSG RGKHSAEAMA VHGVGYHKYA  60
   61 MLRRRQIQIE TEAWEQAAEE YRELLADMCQ QKLAPNLPYV KSLFLGWFEP LRDQIIAEQE 120
  121 LVGERGARAS HARYFNMLPA DMMAVITMHK LMGLLMTGSG DGSVRVIQAA CQIGEAIEHE 180
  181 VRIHKFLEKT KKKSNKEMDN EEEGGDSDIA KEQERLRKKV TDLMKKQKIR QVRNIVKKQD 240
  241 NSKPWGQDAH AKVGSRLIEL MIETAYIQPP ASQSADGPPD IRPAFTHEMR TVAREQQKSS 300
  301 RRYGVIKCDP LVRQGLDRTA KHMVIPYMPM LIPPISWTGY DKGAHLFLPS YVMRTHGARQ 360
  361 QRDAVRRAPR EQMQSVFEAL NTLGSTKWRV NKRVLSIVDR IWSSGGRLAD LVDRTDVALP 420
  421 EKPDTEDEDK LKKWRWTLRA AKKENSERHS QRCDVELKLA VARKMKDEDG FYYPHNLDFR 480
  481 GRAYPMHPYL NHLGSDLCRG VLEFAEGRPL GKSGLRWLKI HLANLYAGGV DKLSYDGRIA 540
  541 FTENHLEDIF DSADRPLEGK RWWLGAEDPF QCLAVCINLT EALRSPSPET MISHIPVHQD 600
  601 GSCNGLQHYA ALGRDKLGAI AVNLVAGEKP ADVYTGIATR VVEIMKNDAL KDPATDPDAA 660
  661 RARLLLDQVD RKLVKQTVMT SVYGVTYVGA REQIKRRLKE RDMICDDSEL FSASCYAAKV 720
  721 TLTALGEMFQ AARSIMNWLG DCAKVIACEN EPVRWTTPLG LPVVQPYRKL GRHLIKTSLQ 780
  781 VLTLQRETDK VMVKRQRTAF PPNFVHSLDG SHMMMTAVAC KRQGLNFAVV GEL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1cezA
Description:	T7 RNA polymerase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits