YRC Public Data Repository - Protein Structure Prediction

Protein:	tr\|M3XFC9\|M3XFC9...
Organism:	Felis catus
Length:	229 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tr|M3XFC9|M3XFC9....

Description	E-value	Query Range	Subject Range
PA1B2_RAT - Platelet-activating factor acetylhydrolase IB subunit beta OS=Rattus norvegicus GN=Pafah1b2 PE=1 SV=... PA1B2_MOUSE - Platelet-activating factor acetylhydrolase IB subunit beta OS=Mus musculus GN=Pafah1b2 PE=1 SV=2	9.0E-59	[1..229]	[1..229]
PA1B2_MOUSE, PA1... - (Q61206) Platelet-activating factor acetylhydrolase IB beta subunit (EC 3.1.1.47) (PAF acetylhydrola...	4.0E-58	[1..229]	[1..229]
gi\|73955102 - gi\|73955102\|ref\|XP_536562.2\| PREDICTED: similar to platelet-activating factor acetylhydrolase, isofo...	1.0E-57	[1..229]	[363..591]
gi\|37590293, gi\|... - gi\|37590293\|gb\|AAH59352.1\| MGC69176 protein [Xenopus laevis], gi\|148230739\|ref\|NP_001080040.1\| hypot...	3.0E-57	[1..229]	[1..229]
PA1B2_CHICK - Platelet-activating factor acetylhydrolase IB subunit beta OS=Gallus gallus GN=PAFAH1B2 PE=2 SV=1	4.0E-52	[1..229]	[1..229]
gi\|30186156, gi\|... - gi\|68382865\|ref\|XP_683731.1\| PREDICTED: similar to Platelet-activating factor acetylhydrolase, isofo...	6.0E-50	[3..222]	[2..221]
PA1B3_BOVIN - Platelet-activating factor acetylhydrolase IB subunit gamma OS=Bos taurus GN=PAFAH1B3 PE=1 SV=1	1.0E-47	[3..202]	[2..201]

Back

Predicted Domain #1

Region A:
Residues: [1-229]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQGDSNPAA IPHAAEDIQG DDRWMSQHNR FVLDCKDKEP DVLFVGDSMV QLMQQYEIWR  60
   61 ELFSPLHALN FGIGGDTTRH VLWRLKNGEL ENIKPKVIVV WVGTNNHENT AEEVAGGIEA 120
  121 IVQLINTRQP QAKIIVLGLL PRGEKPNPLR QKNAKVNQLL KVSLPKLANV QLLDTDGGFV 180
  181 HSDGAISCHD MFDFLHLTGG GYAKICKPLH ELIMQLLEET PEEKQTTIA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.0
Match:	1fxwF
Description:	Platelet-activating factor acetylhydrolase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.84091517928452	bayes_pls_golite062009
platelet-activating factor acetyltransferase activity	0.732293103277365	bayes_pls_golite062009
protein binding	0.564720396960066	bayes_pls_golite062009
hydrolase activity	0.45071330223777	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: