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View Structure Prediction Details

Protein: XYLA_ARATH
Organism: Arabidopsis thaliana
Length: 477 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for XYLA_ARATH.

Description E-value Query
Range
Subject
Range
gi|110740789 - gi|110740789|dbj|BAE98492.1| xylose isomerase [Arabidopsis thaliana]
531.0 [0..1] [477..1]

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Predicted Domain #1
Region A:
Residues: [1-477]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKVEFFMLL LCFIAASSLV SADPPTCPAD LGGKCSDSDD WQGDFFPEIP KIKYEGPSSK  60
   61 NPLAYRWYNA EEEILGKKMK DWFRFSVAFW HTFRGTGGDP FGAATKYWPW EDGTNSVSMA 120
  121 KRRMRANFEF LKKLGVDWWC FHDRDIAPDG TTLEESNKNL DEVIELAKEL QKGSKIKPLW 180
  181 GTAQLFLHPR YMHGGATSSE VGVYAYAAAQ VKKAMEVTHY LGGENYVFWG GREGYQTLLN 240
  241 TDMGRELDHL ARFFEAAVAY KKKIGFKGTL LIEPKPQEPT KHQYDWDAAT AANFLRKYGL 300
  301 IDEFKLNIEC NHATLSGHTC HHELETARIN GLLGNIDANT GDAQTGWDTD QFLTDVGEAT 360
  361 MVMMSVIKNG GIAPGGFNFD AKLRRESTDV EDLFIAHISG MDTMARGLRN AVKILEEGSL 420
  421 SELVRKRYAT WDSELGKQIE EGKADFEYLE KKAKEFGEPK VSSAKQELAE MIFQSAM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 137.0
Match: 1a0cA
Description: D-xylose isomerase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
intramolecular oxidoreductase activity, interconverting aldoses and ketoses 1.98215297280495 bayes_pls_golite062009
catalytic activity 1.66019571685402 bayes_pls_golite062009
intramolecular oxidoreductase activity 1.51395393690522 bayes_pls_golite062009
xylose isomerase activity 1.22142207909888 bayes_pls_golite062009
isomerase activity 0.52890695130173 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle